HsaINT0106845 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1248538-1249011:+
Coord C1 exon
chr11:1248538-1248628
Coord A exon
chr11:1248629-1248904
Coord C2 exon
chr11:1248905-1249011
Length
276 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCCTGCTTTCTTCCCGGCAGACG
3' ss Score
11.15
Exon sequences
Seq C1 exon
CTGGAGCTGGATCCCAAATACGCCAACCAGACCTGTGGCCTGTGTGGGGACTTCAACGGCCTCCCGGCCTTCAACGAGTTCTATGCCCACA
Seq A exon
GTGAGTGCCACCTGGGTGAGGGGGCGGTGACCAATTATGTCGGCCAACGAAGAGCCACAGTCCCGGGGAGGCCGGGAGGGGGCGGAGTGGGGACCGGGCACCAGGCAGGGAGGGGCCACGAGGACTGTGCCCTACATGGTGGGAGGAGTGCCCCTCGGGGGTGTTGGGCCCTAGGCAGGAGTGGGAGTCCTCTGGCCTGGGCTCAGGAAGTGGGAGCCCATATCTTGTCCCCAGGAGCCCCTCAGAGCCACCACACCCCTGCTTTCTTCCCGGCAG
Seq C2 exon
ACGCCAGGCTGACCCCGCTCCAGTTTGGGAACCTGCAGAAGTTGGATGGGCCCACGGAGCAGTGCCCGGACCCGCTGCCCTTGCCGGCCGGCAACTGCACGGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(20.3=100)
A:
NA
C2:
PF0009420=VWD=PD(0.7=2.8),PF087426=C8=PU(4.2=8.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGATCCCAAATACGC
R:
CTCGTCCGTGCAGTTGCC
Band lengths:
196-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)