BtaINT0096538 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51401294-51401904:-
Coord C1 exon
chr29:51401767-51401904
Coord A exon
chr29:51401459-51401766
Coord C2 exon
chr29:51401294-51401458
Length
308 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
ACCCCCACCCCTGCCCCCAGGCC
3' ss Score
9.57
Exon sequences
Seq C1 exon
CGGACGTCACGGTCTTCAGGCCGTCGTCCTTCTTCATCCTGGTGCAGACGGGCCCCTGGCTGCAGCTGCAGGTGCAGCTGGTGCCCCTCATGCAGGTGTTCCTCCGGCTGGACCCCGCCTACCGCGGCCAGATGTGCG
Seq A exon
GTGAGGCTGCGGGGGGGGGGCTGGAAGCAGATGGGCAGCCAGGGCGGGGACGCAGCCTGGGAGGCGGGGACCCTGGCCTGGGACAGTGGCTGGGAGGGTGAAGCACAGGGCACGCTGCCCTCATGGCAGGCTTCACGCTGGGGCTGACCTCCCCCTCCCACCAGAGGTCATCTGCAGATAGTTCTGGAGCCTACCTCCCAGGACTCTGGTTGGGTGGAGTCACCTTGTGGTGGGCCCTGCAGGTGTGGGGAGCCTGGGCCGGACTGGGCAGCCCCCTGATGCTCACACACCCCCACCCCTGCCCCCAG
Seq C2 exon
GCCTGTGTGGGAACTTCAACCAGAACCAGGCCGACGACTTCCGGACCGTCAGTGGCGTGGTGGAGGCCACGGCTGCGGCCTTCGCCAACACCTGGAAGACCCAGGCCGCCTGCCCCAACGTCAAGAACAGCTTCGAGGACCCGTGCTCACTCAGCGTGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(30.9=100)
A:
NA
C2:
PF0009420=VWD=PD(12.8=33.9),PF087426=C8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCACGGTCTTCAGGC
R:
CTGAGTGAGCACGGGTCCTC
Band lengths:
290-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]