BtaINT0096543 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51398639-51398899:-
Coord C1 exon
chr29:51398847-51398899
Coord A exon
chr29:51398740-51398846
Coord C2 exon
chr29:51398639-51398739
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CAGCATGGCTGTCTCCACAGGGT
3' ss Score
6.94
Exon sequences
Seq C1 exon
CTCGTGTGTGAGCGGGAGGCTGAGCTGTCTGGGGGCCACGGAGCAGAGCACAG
Seq A exon
GTGCGGCCTCCCCTGGACCTCTGCCCCTGGGGCCCCGTGCTCCCCCCATGACCGAGGGGAGGGCTGCGGCTGGCCGGGAGGCCCTCCCAGCATGGCTGTCTCCACAG
Seq C2 exon
GGTGCGTGGCCCCTATGGTGTTCCTCGACTGCAGCAACGCCTCTGCGGACGCGCCGGGGGCTGAGTGCGTGCGAAGCTGCCACACCCTGGACGTGGACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(51.6=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGTGTGAGCGGGAGG
R:
ACAGTCCACGTCCAGGGTG
Band lengths:
154-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]