DreINT0099130 @ danRer10
Intron Retention
Gene
ENSDARG00000099470 | muc5.3
Description
mucin 5.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1562]
Coordinates
chr7:72071693-72072249:-
Coord C1 exon
chr7:72072200-72072249
Coord A exon
chr7:72071794-72072199
Coord C2 exon
chr7:72071693-72071793
Length
406 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CTACAAATCTTTCATTTCAGAGT
3' ss Score
7.5
Exon sequences
Seq C1 exon
TATTTGCCAGCAAGGGAAACTGAGCTGCTCTGGTGTATCAAATGGAGAAG
Seq A exon
GTATGTATGTGAATCAGGGTCGCTCCAGCCAATTGCATAACAGCTACTACTGGGGAGGCAGGACTAAAGATAGCACAGCCCAATCTGATTGGACGAATTTAGATAACTAATGCATAAAGTAAAAGGATGGGTCAGCAGTGTAATTAAGGATGCTATAACATGCAGTTATCCAATCAATCTAAAGTACAATGTAAAAAACTATTTACACATTCAGTACAAATGATTAGTTTCAGAGTAAGTACAATAAGCAAGGCCATTAATACAAAGTGGGAACGTATATTAAACCTACATTGAAGCCATTTCAGGTTTACACACTGATAACAAGCAGTGATTCTGTTATATTTAACATCCAGTACCTTAAAGTGATTTTACTGTTGTTCTCAAGTCTACAAATCTTTCATTTCAG
Seq C2 exon
AGTGCACAGAGCCAATGAGGTTTTTCAACTGCTCGAGCGCCAGTCCCGGGTCAGAGGGAGCAGAGTGTCAGAAGAGCTGCAACACACTTGACATGGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099470:ENSDART00000162367:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(51.6=91.4)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]