BtaINT0096551 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51394657-51395232:-
Coord C1 exon
chr29:51395076-51395232
Coord A exon
chr29:51394786-51395075
Coord C2 exon
chr29:51394657-51394785
Length
290 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCTCTCTCCCCCTCGCTCAGCTC
3' ss Score
7.04
Exon sequences
Seq C1 exon
GTCGACCCCACCAGGTACTACGAGGCCTGCGTGAGCGACGCCTGCGCCTGCGACTCAGGGGGCGACTGCGAGTGTTTCTGCACGGCCGTGGCCGCCTACGCCCAGGCCTGCCACGAAGCGGGCGTGTGCGTGTCCTGGCGGACCCCGGACGTCTGCC
Seq A exon
GTGAGTTGGGCTGTCCCTGGGGGTGAGAGGAGGTGCAGCTGCAGCCGCTCGGGGGCCTGGCGGGCATGTGTGCACACACAAGGACATGCGTGTACTACATGTGTGTGTGCGTGCTCTTGTGTGTAAAAACCAGACAGACACATTGCCCCCAAAGGGGAAGGCTCCCTGGGGGCCAGTTTTGAGGGCAGGGATGAGAAGGAAGCCTGGAACCCAGTGGGTGCAGCCTGAGATGCCTCCTTTGTGGGAGGGTGAGCTGGCAGGCACCTGCAACCTCTCTCCCCCTCGCTCAG
Seq C2 exon
CTCTGTTCTGCGACTACTACAACCCACACGGGCAGTGCGAGTGGCACTACCAGCCCTGCGGCGCGCCCTGTCTGAAGACCTGCCGGAACCCCAGTGGGCTTTGCCTGATGGACCTGCCAGGCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGACCCCACCAGGTACTAC
R:
TGGCAGGTCCATCAGGCAAAG
Band lengths:
276-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]