MmuINT0102465 @ mm9
Intron Retention
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:149041401-149042042:+
Coord C1 exon
chr7:149041401-149041557
Coord A exon
chr7:149041558-149041913
Coord C2 exon
chr7:149041914-149042042
Length
356 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
GCTCTGCCCTCCTTGCTCAGCTC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GTTGACTCTACAAAATACTATGAAGCCTGTGTGCATGATGTGTGTGCCTGTGACTCAGGGGGTGACTGCGAGTGTTTCTGCACCGCTGTGGCCGCCTATGCCCAGGCCTGCCGTGATGTGGGTGTGTGCTTGTCCTGGAGGACACCGGACATCTGCC
Seq A exon
GTAAGTGGGGCTCTGTTTATGGTATTGAAGGGTGGGACTGGGGATGAGGTGGGTGGCAGCCTCTGTACCTCCCTCATGCCTTCAATTCTGGCCACTCTGACATGTGAATGTATGTTTGTATGTGTGTATGTGTGTGTTTGCACACACACATGTGTTTTTGTACATGAGTCCACATATTTATATACACGTGTGGCTCTTTGACACCTAACAGGTGGTAGTTGAGGCTGTGGCCTCCAGGATTTGGGGGAGGGAATGAACCCAGGGAAGCTATCTGCCTAGCCCAAGGCTTGTGTATCTGGATGCAGGCTAGCATAAAGTCTAACAGGCGCCCACTTAGCTCTGCCCTCCTTGCTCAG
Seq C2 exon
CTCTTTTCTGTGACTACTACAACCCTCATGGGGAATGTGAGTGGCACTATCAGCCCTGTGGAGCCCCCTGTCTGAAGACCTGTCGGAACCCAACTGGACACTGCCTCGTTGACCTGCCAGGTCTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-Muc5b:NM_028801:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCTACAAAATACTATGAAGCCT
R:
CAGGTCAACGAGGCAGTGTC
Band lengths:
271-627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: