GgaINT0058651 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:15809744-15810269:-
Coord C1 exon
chr5:15810113-15810269
Coord A exon
chr5:15809842-15810112
Coord C2 exon
chr5:15809744-15809841
Length
271 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
AAATTTATGTTTCTCTTTAGCAC
3' ss Score
7.5
Exon sequences
Seq C1 exon
GTTGAACCAGCAAAATATTATCAAGCATGTGTGACAGATGCTTGTGCCTGTGACTCCGGAGGAGACTGTGATTGCTTTTGTACAGCAGTAGCTGCCTATGCTCAAGCATGTAATGAAGTTGGTGTCTGTATAGCCTGGAGAACCCCATCAATCTGTC
Seq A exon
GTGAGTTTTATTTTATATACGCTTCTTCTGAAAATGTAGCAAAATATACAGCAATTCCTTGCTGATATTTTCAAACACATATTCTGTGTACCTCATGTACATGCATTATAAGTGCACTGTGTACTTTTCACAGGGTTTTGTTGGTCACACATTTCACCTATTCATTCAGTTTTCAAGGCTGTTCAAGGCAGCATGGTAGGGATCTGAACAGACATGGCTCAAAAGTTTTGGTTTATTTTCTGAACATGTTCAAATTTATGTTTCTCTTTAG
Seq C2 exon
CACTGTTCTGTGATTACTATAATCAACAAGGAGAATGTGAATGGCACTATAAGCCTTGTGGAGCCTCCTGTATGAAGACCTGTAGGAACCCAAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023540:ENSGALT00000039116:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCAGCAAAATATTATCAAGCA
R:
CCACTTGGGTTCCTACAGGTC
Band lengths:
252-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]