Special

DreINT0099001 @ danRer10

Intron Retention

Gene
Description
mucin 2.2, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120904-1]
Coordinates
chr25:8254980-8255495:+
Coord C1 exon
chr25:8254980-8255136
Coord A exon
chr25:8255137-8255366
Coord C2 exon
chr25:8255367-8255495
Length
230 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGC
5' ss Score
5.09
3' ss Seq
TTGTATTTTTTCCCTGTCAGCTG
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTGGATCCAACACCGTATTATGACAACTGTTTGAAGGACACGTGTGCATGTGACACTGGAGGAGATTGTGAGTGCTTGTGTACGGCTGTGGCTGCTTACGCTCAAGCCTGCAATGAGGCTGATGTTTGTGTGAACTGGAGAACACCTGATTTCTGTC
Seq A exon
GTAAGCGTCTTTAATATCATTACAGATTATACATTTATAATAGCTGAATGGGTATTTTATGCAGATTCTAAATATTTAATCGTTGCTGCTTCACAGAAAATATAATGAAAGCAAGTTAAATAATTGTCAAATAACATGATGCAAGTATGATTAATGCTTGATTTGCTTTTGTTTATGCTGCAGTTATTGCATTTATACATGCTCATACATTTGTATTTTTTCCCTGTCAG
Seq C2 exon
CTGTTTACTGTGACTACTATAATAAACCAGATGAATGTACGTGGCATTACAGTCCTTGTCATCCACCTTGCTACAAAACCTGTCTCAACCCTAGTGGTATCTGCAATAACACTTTACCCAACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078994:ENSDART00000154598:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF087426=C8=FE(69.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATCCAACACCGTATTATGACA
R:
CTTCCAGGTTGGGTAAAGTGT
Band lengths:
286-516
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]