BtaINT0096568 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51374729-51375506:-
Coord C1 exon
chr29:51375251-51375506
Coord A exon
chr29:51374916-51375250
Coord C2 exon
chr29:51374729-51374915
Length
335 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TCCCCCGGTCACACCCCCAGATC
3' ss Score
8.17
Exon sequences
Seq C1 exon
GCCTGCAGGTGTCTGCAGCGGCTGGGGGGACACCCACTACGAAACCTTTGATGGCACCTCCTACTCCTTCTGGGACAACTGCACCTATGTCCTCATGCGCGAGATCCAGCCACGCCATGGCAACCTCCGCATCCTGCTGCACAACCGCTTCTGTGAGGCCACCGCCCACTGCCCCCGTGCCCTAAGCATCCACTACCAGTCCGTGGACATCGTCCTCTCCACCACCAGCAGCGCCGCTGGGCAGGAGGAAAGCCTG
Seq A exon
GTGAGCGCGGGCGGCAGAGCAGCGGTGGCCGGTCCCGGCCTGGTTTAGGGGGACCCTGGTGCACAGAGATCACGTTGTCCCCCTGCCAGAGAGCCTCAGGGGCCTTGGGGAAGACAGAGGGCACACCAGGACCTGGGGTCCCGAGTGTGGTGACTCCAGAGAGGGCAGGGAAGGAGCACGGGGGTGCCCGAGGCCAAGAGCCCCTGGGACCCAACACACTGACCGTGACCCCAGCCTGAGGTGGGTGTCTGCTCTTTGGGGCACGGGTGCCCAGGAGGGGGCCCAGCACCTGGGAGCACAGCCCAGGTGTCATGGTCCCCCGGTCACACCCCCAG
Seq C2 exon
ATCCTGCTGGACCAAACTCGGATGAGGCAGAGCTTCAGCAAGAACGGCGTGATCGTGACCCTGACCGGGGCCACCGGGATGCGCGTCGATATTCCCGCCGTCGGTGTCGGCATCACCTTCAACGGGCGGGTCTTCCAGGCCCGGCTCTCCTACAGCCGTTTCAGTCACAACACCGAGGGCCAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.0=93.0)
A:
NA
C2:
PF0009420=VWD=FE(38.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCTATGTCCTCATGCG
R:
TCGGTGTTGTGACTGAAACGG
Band lengths:
354-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]