BtaINT0096569 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51374283-51374915:-
Coord C1 exon
chr29:51374729-51374915
Coord A exon
chr29:51374512-51374728
Coord C2 exon
chr29:51374283-51374511
Length
217 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CTGAACCCCGCCCTCCCCAGGCA
3' ss Score
7.9
Exon sequences
Seq C1 exon
ATCCTGCTGGACCAAACTCGGATGAGGCAGAGCTTCAGCAAGAACGGCGTGATCGTGACCCTGACCGGGGCCACCGGGATGCGCGTCGATATTCCCGCCGTCGGTGTCGGCATCACCTTCAACGGGCGGGTCTTCCAGGCCCGGCTCTCCTACAGCCGTTTCAGTCACAACACCGAGGGCCAGTGCG
Seq A exon
GTGAGCGGGGCTGCAGGACGCCTGCAGGGGTGGCGAGGGGCCGGCACCACCGCAACGGGCGCACCCCCCCCGGGGACCCCAGACGCACAGCCGGCCCCTGCACCTGCCCCAGGCGGGAGGCCCTCTTTGATAGCTGAGCAGTTGCTGGGGAGGTTGGGAGACGAAGGGGGACGGCGACGACGGTCCAGTGTGTCCCCCTGAACCCCGCCCTCCCCAG
Seq C2 exon
GCACCTGCACCAACAACCGCCGGGATGAATGTCGCCGGCCAGACGGCACCACGGCCCGCACCTGCCGGGACATGGCCCGGTCCTGGCTGGTCTCCAACAGCAGCGTGGAGGGCTGCGGGGTGCCCACCGGCCTGCCCCCAACCACCAGCCCCCTCTTGCCGGAAACCAGCACGCCCGCCATCCACCCGTCGTGCCCCCCAGAGCCCCTCTGCGAGCTGATGCTGAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.8=100)
A:
NA
C2:
PF0009420=VWD=PD(10.0=20.8),PF087426=C8=PU(17.3=16.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGACCAAACTCGGATG
R:
CTCCACGCTGCTGTTGGAG
Band lengths:
294-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]