BtaINT0096572 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51373543-51373940:-
Coord C1 exon
chr29:51373871-51373940
Coord A exon
chr29:51373644-51373870
Coord C2 exon
chr29:51373543-51373643
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGCCTTTGTCGCCTTGCAGGAG
3' ss Score
11.32
Exon sequences
Seq C1 exon
ACCTCACCTGCCCGTCCGCCAAGGTGTACAAGTCTTGTGGCCCTGTGCAGCCGGAGTCCTGCGACTCCAG
Seq A exon
GTGAGCCCAGCTGACAGGGAGAGCATGGTGGGGACAGCGGGCCTCCCAGGCTGGCCTGGAGGACCTGGTGGGGAGCCAGGAGGAGACCCACGAGGCTCCAGGACCCCGACCCCAAATCTCGGGGGTGCCCTTCCCCCACCCGACCTCCGACCCCGGACCCGAGGTTGCCCCTGGGCCTGCACCCTGCCCACTGCCCTCCCCCTCAGTCTGCCTTTGTCGCCTTGCAG
Seq C2 exon
GAGCCAGAGCCCGCTGAGCGTTGGGCTGGCAGAGGGCTGCTTCTGTCCCGACGGCCACATCCTCTTCAATTCTCACAGGGACATCTGTGTGCCCGAGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(35.7=83.3)
A:
NA
C2:
PF0182612=TIL=FE(60.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGCCAAGGTGTACAAGTC
R:
CACTCGGGCACACAGATGTC
Band lengths:
156-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]