MmuINT0102478 @ mm10
Intron Retention
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:141868155-141868506:+
Coord C1 exon
chr7:141868155-141868224
Coord A exon
chr7:141868225-141868405
Coord C2 exon
chr7:141868406-141868506
Length
181 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCTGCTCCTCCTCACATTAGGAC
3' ss Score
7.73
Exon sequences
Seq C1 exon
ACCTCTCCTGTCCACCCACTAAGGAGTACAGGCCCTGTGGACCCCTGCATCCAGCATCCTGCAACTCGAG
Seq A exon
GTGAGTAGTACCTCAGTGACAGGGAATGTGGAGGTAGCAGCTGGCCTCCCAGGCATGTCTGAAGAGTTGACACTGAGCCTGTGGGTACCTTCATCCCAGGACTCCCTGGGATGTTCACAACTGGCTCTGAGAGGTACTCCCCGATTTCTGATGTATACTCTGCTGCTCCTCCTCACATTAG
Seq C2 exon
GACCCAGGATAGTACAACTGGGATGCTGGCAGAGGGCTGCTTCTGCCCTGAGAACCAGCTCCTCTTCAACTCACGCATGGACATCTGTGTGTCAGAGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108:ENSMUST00000165147:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(35.7=83.3)
A:
NA
C2:
PF0182612=TIL=FE(60.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCTGTCCACCCACTAA
R:
GACACACAGATGTCCATGCGT
Band lengths:
162-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types