RnoINT0095741 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214805782-214806133:+
Coord C1 exon
chr1:214805782-214805851
Coord A exon
chr1:214805852-214806032
Coord C2 exon
chr1:214806033-214806133
Length
181 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCTGCTTCTCCTCACATTAGGAC
3' ss Score
7.68
Exon sequences
Seq C1 exon
ACTTCTCCTGTCCACCCTCTAAGGAGTACAGGCCTTGTGGACCCATGTATCCAGCTTCCTGCAGCCCCAG
Seq A exon
GTGAGAGCTCGCTGAGTGAGAGAAATGTGGAGGTAGCAGCTGGCCTCCCAGGCATGTCTGAAGGGTTTCAACTGAGCATGTGGGTACCCTCCTCCCAGGACTCCCTGGGATGTTCACGATTGGCTCTTGGAAGTGCAACCTGATTTTTGACCTTACACTCTGCTGCTTCTCCTCACATTAG
Seq C2 exon
GACCCAGGAACTTTCAGATGGGACCCTGGCAGAGGGCTGCTTCTGCCCTGAGGGTCAGCTCCTCTTCAACTCACGCACGGACATCTGTGTGTCTGAGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(35.7=83.3)
A:
NA
C2:
PF0182612=TIL=FE(60.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCCTGTCCACCCTCTA
R:
ACACTCAGACACACAGATGTCC
Band lengths:
170-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]