BtaINT0096577 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51372210-51372432:-
Coord C1 exon
chr29:51372328-51372432
Coord A exon
chr29:51372248-51372327
Coord C2 exon
chr29:51372210-51372247
Length
80 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
AGCAACCCCTTTCCTTCCAGAGC
3' ss Score
7.73
Exon sequences
Seq C1 exon
TCTGCAATGCAAGCACGTGCCCCCAGAGCCCCCCTGCATGTCGGCTGGGAGAGAAGCTGGTCCGCACCCAGGTGGAGGATGACTGTTGCCCCACCTTCAGCTGCG
Seq A exon
GTGAGTCTCCGGGCTCGGGGGACGGTGGGGCTGGGGCTGGGTGCCTCCCGGCAGGTGCTCAGCAACCCCTTTCCTTCCAG
Seq C2 exon
AGCCTCTGCTGTGCACCTTCAATGGCACGTTCTATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:70
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009313=VWC=PU(12.7=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAATGCAAGCACGTGC
R:
CCCATAGAACGTGCCATTGAAG
Band lengths:
143-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]