HsaINT0106837 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1279329-1279597:+
Coord C1 exon
chr11:1279329-1279433
Coord A exon
chr11:1279434-1279559
Coord C2 exon
chr11:1279560-1279597
Length
126 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGC
5' ss Score
3.29
3' ss Seq
TTAGCTCCCTTTCCTTCCAGGAC
3' ss Score
10.85
Exon sequences
Seq C1 exon
TGTGCAACACAACCACCTGCCCCCAGAGCCTGCCTGTGTGCCCGCCAGGGCAGGAGTCCATCTGCACCCAGGAGGAGGGCGACTGCTGTCCCACCTTCCGCTGCA
Seq A exon
GTGAGCGGGGCTGGGGCCGGGCTCCTGGGTGGCCTCTTGCTGGGGGTGGGGGAGTGCAGGATGGTGGGGGCGCTGGAGCACATGCTCCCCACCACTTGTCGAGGGCTTAGCTCCCTTTCCTTCCAG
Seq C2 exon
GACCTCAGCTGTGTTCGTACAATGGCACCTTCTACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:42
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009313=VWC=PU(12.5=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAACACAACCACCTGC
R:
CCCGTAGAAGGTGCCATTGTAC
Band lengths:
143-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)