BtaINT0096657 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003914 | MVB12A
Description
Bos taurus family with sequence similarity 125, member A (MVB12A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034283]
Coordinates
chr7:5612633-5613228:-
Coord C1 exon
chr7:5613102-5613228
Coord A exon
chr7:5612753-5613101
Coord C2 exon
chr7:5612633-5612752
Length
349 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGC
5' ss Score
8.18
3' ss Seq
CTCTCTTCTTCCTCCCCTAGGGA
3' ss Score
12.98
Exon sequences
Seq C1 exon
AGGCCTCCGTGTCCAAGAAGAAACGCATGTGCGTGAAGCTGGTGCCCTTGGGGGCCGCGGACACAGCTGTCTTTGACATCCGACTGAGTGGGAAAACCAAGACAGTCCCTGGATACCTGCGAGTAGG
Seq A exon
GTACGCCTGCTCCCCCGCCTTCCTTCTTTGCCCTCCCAACTCCCTGCCTGCCCCTCTGGCTCTCAGGGACTCCCATGAGGCCTCACATCCCTCTGCCACCTCTCTGTGCCTCAGTTTCCACATGTTAAGATGGGGACAGTTGTACTGGGATCTCACTGGGCAGTGGTGAGGAGCTGGTGTGTCTGAAATGCCCGATACGGTGGCTGAACCCAGCAGGATTAGTTAGGATGTTGCTGATGGTGTGGGCTGAGACCTGAGGTCACCAGAGCCTGTCTTCCCGCTGGCAGCTGTTCTCATCCCTGGCTGCACATCAGGCCAGAGCCCCTTCTCTCTCTTCTTCCTCCCCTAG
Seq C2 exon
GGACATGGGGGGCTTTGCCATTTGGTGCCGGAAGGCCAAGGCCCCTCGGCCAGTGCCCAAGCCCCGAGCTCTTAGCCGAGACGTGAGGGACCTCTCCCTGGACTCGCCGGGCCAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003914:ENSBTAT00000005111:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.488
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(16.7=100)
A:
NA
C2:
PF102404=DUF2464=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCGTGTCCAAGAAGAAA
R:
CGAGTCCAGGGAGAGGTCC
Band lengths:
231-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]