RnoINT0095883 @ rn6
Intron Retention
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19975883-19976344:+
Coord C1 exon
chr16:19975883-19976009
Coord A exon
chr16:19976010-19976224
Coord C2 exon
chr16:19976225-19976344
Length
215 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
CTCTCCTCCCCTTACTCCAGGGA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GGACCTCTGTGTCCAAGAAGAAGCGCATGTGTGTGAAGCTGATGCCCCTGGGGACGGCAGACGTGGTAGTGAGTGACGTGAAGCTCAGTGGGAAAACCAAGACCGTGCCTGGGTATCTGCGAGTGGG
Seq A exon
GTAGGTACAGCATCCTGTTCTAGCTCCTGTCCCTGCCACATTGCGTCCTGATTTTACCCACATCTCTGAATGTGGGGATGGCATCGCATGGGCCCTGTGGTCAGTATGCTGATCGGCATGAGGATGAGCTGCTGAGAGAAAATTACCCCCACACGGTGGCCACCCGGAGAGGCTGCGCAGGGCACCGATGCCCTCCTCTCCTCCCCTTACTCCAG
Seq C2 exon
GGACATTGGTGGCTTTGCCATCTGGTGCAAGAAATCCAAAGCCCCAAAGCTGGTGCCCAAGCCCGGCACACTCAGCCAGGACATGCGAGGCCTCTCACTGGACCAACCCAAAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949:ENSRNOT00000024413:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.512
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(16.7=100)
A:
NA
C2:
PF102404=DUF2464=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGTGTCCAAGAAGAAGCG
R:
CTGGGCTCTTTGGGTTGGTC
Band lengths:
244-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]