BtaINT0096661 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003914 | MVB12A
Description
Bos taurus family with sequence similarity 125, member A (MVB12A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034283]
Coordinates
chr7:5611162-5611819:-
Coord C1 exon
chr7:5611763-5611819
Coord A exon
chr7:5611562-5611762
Coord C2 exon
chr7:5611162-5611561
Length
201 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCCCACTCCTCACCCGCCAGTAC
3' ss Score
4.53
Exon sequences
Seq C1 exon
GCCTTCTCTGCCTTTGCTGATCTGACCATCAAATCGCTGGCGGACATTGAGGCGGAG
Seq A exon
GTGGGTGTGGGATTAGGGAGGGGGTGGAGTTGCGGGGATGCAGGCCACTTCCTCTCCCCTGGGCCCCCCTTCTGTCCCAGCTGTAACCCACCTTGAGGGCTGCAGATCCCTCATGCCCCACACCCTACCATTCCTCTGGCGCCCCCCAGTGGCTGCTCTCTCACTTTGTACTCTCCCTTCACCCCACTCCTCACCCGCCAG
Seq C2 exon
TACAACTACGGCTTCGTGGTGGAGAAGACGGCAGCTGCCCGCCTGCCTCCAAGCGTCTCTTAGCCCTTCAGCAGTCCCAGGGAGGAGCCGCCACATCTGACACCGCCCCTCCCCACCCCATCACCCCGCTGACTGGCAGCTGCCCAGCCCATTCCACCTTGGGACCTTTAGCAGCGCAAGGCATGCTGGACCCTCGGCCACTTGGAGGAGCTGCAGCCTGGAGGAGGGAGCATGACCGGTTCGCCCTGTGATGGGTTCCCGGGCCCTAATGGATAGGGGTGGGGGCTGGACAGAAACCAGTGCCTTCAAGTCATTTGTGTCAAAACTCTCTGGTGCCTGGAGGCCATGCGGGTGTCCTGGTAATAAACACCACGCTGTCCAGAGGTTATCTATAATCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003914:ENSBTAT00000005111:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.1=100)
A:
NA
C2:
PF102404=DUF2464=PD(2.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAATCGCTGGCGGACATT
R:
CTATCCATTAGGGCCCGGGAA
Band lengths:
306-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]