RnoINT0095887 @ rn6
Intron Retention
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19978033-19978478:+
Coord C1 exon
chr16:19978033-19978089
Coord A exon
chr16:19978090-19978219
Coord C2 exon
chr16:19978220-19978478
Length
130 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CCCCCACCTCTGCTCCCCAGTAT
3' ss Score
6.35
Exon sequences
Seq C1 exon
AACTTGTCTGCCTTTGGGGACCTGACGATTAAATCACTGGCAGACATTGAGAAGGAG
Seq A exon
GTAGGTGCAGGGCTGTGCAAGGTGCTGGGGCCTACCCTGTGCCCTGGTCTGCCCCCACTCCTCAGTCCTTCCCAACGCCCCTCCCCCCTGGCCCCAGGCCCTCATTTAGCCCCCCACCTCTGCTCCCCAG
Seq C2 exon
TATAACTATGGCTTCGTGGTGGAGAAGACCGCAGCTGCACGCCTGCCCCCCAGTGTCTCATAGCCCAGCCACAGGTGCCACCTGGCGCCACCTGCCTCACAGACACTGCTGATCGGCCCCAGCCTCTCAGCCCGGCTACTTGCACAAGGGGTCTCTTGCCTGGTGGTGCAGGGGCGGCCTGGGCAGAGCAGTGACCTTCTCTCAGAAGTCTGAGTCTAGCAGCCACATATGCACCAGCAGTAAACACTACCTGGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949:ENSRNOT00000024413:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.1=100)
A:
NA
C2:
PF102404=DUF2464=PD(2.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTGTCTGCCTTTGGGGAC
R:
GAGAAGGTCACTGCTCTGCC
Band lengths:
258-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]