BtaINT0097077 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30130170-30131080:-
Coord C1 exon
chr19:30131053-30131080
Coord A exon
chr19:30130285-30131052
Coord C2 exon
chr19:30130170-30130284
Length
768 bp
Sequences
Splice sites
5' ss Seq
CACGTATGT
5' ss Score
7.26
3' ss Seq
ATTTGACAACTGTTTGACAGCGG
3' ss Score
4.02
Exon sequences
Seq C1 exon
ATCGGGAGAATCAGTCTATCTTGATCAC
Seq A exon
GTATGTATTATTATTCTGACACTCCAGTTTTATTTTCACTGGGAAAATGACTAACCAAAGGAATAAATTAGTTCATGCCCCCGTATTAAAGCAATGGCAAATCAGCCAGGAACTAAATACCGTTATTGTTTATTATAGGGTTCGGATTGCATCTGAATGTAAAATAGCAATGTCCCAAATTACATCATTTGCTAGACCAACCTTAAAAGTCCCAGAGCTTTCCAGGGATTAGATGTAAAACACTATGTCCACACGTGGCCAGAACCCAGTACTGGACAGCAAGCGTATATACCTTCTAAAGGCTGGACACTTTGTGAATATTACCAGTGGTTCATTTTCAAGGCTTACTGGAGGAATGTCTAGTCCTTCAAAGACCTAACTTGGGAGTATCTTTAGTCTAAGGAAGCAAAAGAACGCATGCATTGCTTCAGAGAGTTTTTACTAATCGTTTCATTTACTACATAATGGTTGAGTTAGTTGCTTCTCGGACTCCTCAAGCCCTGGCCTCAGCACATAGAAGAGAGCTTGACACATTTTAAGCACTCAAGAAACAAGTGCTGCATGATTAATGATTGAATGTCTCAGCTTTTCATCAATGCAAAGCAACAGAAATAATACGAGCTAAACACGGGCTGAAGAGAAAAACCTAGGGGGCTCTGACAAAGACATATAAAGACAGGCACATTGGCTAGTCAAGGGTAATAAAGGAAGCAGTTTCACTTGTCATAGAGCTTAAATTCTCACATTTATTTGACAACTGTTTGACAG
Seq C2 exon
CGGAGAATCTGGGGCAGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGGGAGAAGAAGAAGGAGGAACCAACTTCAGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204:ENSBTAT00000009327:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development