BtaINT0097121 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14261064-14263586:-
Coord C1 exon
chr25:14263520-14263586
Coord A exon
chr25:14261220-14263519
Coord C2 exon
chr25:14261064-14261219
Length
2300 bp
Sequences
Splice sites
5' ss Seq
CATCTTTTT
5' ss Score
-22.38
3' ss Seq
CCCTGTCCCCTTACTCCCTGCAG
3' ss Score
-1.98
Exon sequences
Seq C1 exon
ACGAGTATTTTTGACACCTGCTAAATGCCGGGCAGTGGATACAGTGAGAATGAGAAGAACCGCCCAT
Seq A exon
CTTTTTTTTTTAATATATATTTTTTTTACTTACAATATGTATGGTTTGCAATATCATGTGATCACACAGGTATACATGCGTTCCCCATCTGAACCTCCTCCCTCCTCCCTCCCTGTACCATCCCTCTGGGTCGTCCCAGTGCACCAGCCCCAAGCGTCCAGTATCATGCATCGAACCTGGACTGGCAACTCATTTCATATATGATATTATGCATGTTTCAATGCCATTCTCCCAAATCACCACCCCATTTCTTATGCCGTGTATGGTCTTGTTGGGGATACAGACCTCATGTTTCCCTGAAGTGGGGTTGTCAGATAAAACACAGGATGCCCAGTGGAATTTGAATTTCAAATAAACACTTCTGATTGTAAGTATGTCCTAGGCAATACTGGGGACATAATTATACTAAAAATTCTTCATTGCTTATCCGAAATTCAAGTTTCACTGGGTGTCCTGTATGTTTTTCCTAAATCTGACAGCCCTACCTGCAAATAAACAGTGTTTTGTGTTTCAAAAAGATGGCTGGATACCACCATGCTTGTTGGCGGCTGATCCAGAAGGATGACTCAGGTTCCCAGCTTGCTCACCTGTGGCCTCAACACCCCTGTCTCAATATTGGGCTGCTTTTCCAAGCTCCCTTTTGAACTGCCAGTTGTTTCTTATGTCTTACACTCCCCAAAATGGCAAGTTAAAGAAAATCTCATTCTGAGGAGAGACCCTCAGGGAAACAGAAATGAAAAGAGCACCTTTGCAAAAAGACGGGGGGAAAAATCCTAAAACTACACGATCTATCGTCCACCTCACACCATTCCAGACCATTGTATGTCGCTAGTCCTCACATTTAGGAAGCAGCTAACGTTGGATTTTTTTTTTTTTTTTGAGAAAACCTTTTTAAATGCAGAACTACATGAATACGAGAGCCCACATGTCCACCATTCAGAATAGACATTTGTGACTATTTTTGAATACTTCTTTATCTTTAGAATGAAACGAGACACAGTATAGACAAGACTGACGTCTCTCATTCTCCCAGCTGGGTCTCGTTCTTCTCCCTGAACCTCCTGACAAGCACAATTGTACTTTACCAGATACCCTTCTGGTCTTATGTTTATACCCTCACACACATATATCTGAACAATATACAGTGGTGTTTTGTGAGTGTGTTTTTTTATTTACATGGATGATATCACACTATAGACATCATCTTGCAACTTTTTTTCTAGAGAAAAAATACTTACAAAAATACCGTGATATATTTGTTTGTTCCCTTGTGAACAAACATTTAAGTTGTTTCCAATATTTTTCTCTCTGCATATATTGCCACATATGTCTTGGAATGGCAGAACAAATGCTTATTGAATTTAACTATATGTCAGGTATATACCTACCTCATTTAATCCCATTGACAATCAAACAACATACCAAATAGCTGACCATTTCTGCAAGCTAGAGTTTGGGAAGTTAAGTAGCATTTCCAAAAAAGCACATGGCTAAGAAGTGGGAAAAGAGCGAGGAGCTGAACCTGGCTCTGGCCCGAAGCCCCCAGTTGGGGCACACCTCCATCCCAGCCCCATCACTGCCTCTTGGTAAGATGCTGGGGGTGAGGCCACTAATGACAGCAGCTTATAGGACTCTTTCATGCTGTGGTCACTGTCATGTTCCACATCGAGAAAAAAAGTGTATCCACAGGTCACAGATATCACATGCAATATGCCTTCTTTTCCAAGCCTTCACTTTTGTGATGCACTTAATATGTTTCTTTCCTCCATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATAATCAAAGTCCCGTGTCAGGTCCTGAAGGTACAACCCTGGCTGAGCGAGAACATCAGAGGCTCTCACTCCTGACCTCATCTTGATCTCTTAGTTGAAGGTATGAGGGCTGACTTAACCTTTGGAAATGCCTCTGGACCCTTTCTAGAGGCAGGACTGACTGCCTCTAAGTGACCCTGGGGTGGAGCAGGCTCCACTCTGTTCCAGGTCCCTCTGGCAGAAAGTGACTACTTAGCCACATCGCCATTCCTTAGGTCTAACCACTCTGTCCCTTATTGCCAGTTGTAGAGATGGTATACTTTCCTTTTCTTTGTTTATCTTTTAAGGAGTAATTGTAGATAGAGGGAGTATAAAAATCCAGGACCACCAGTCAGGCTCTTGTGAAAATGCACCCATTGGGAGTAACCCTGTCCCCTTACTCCCTG
Seq C2 exon
CAGGCAGACTTTGCCGTAGAAGCTTTGGCCAAGGCCACTTATGAGCGCCTTTTCCGCTGGATACTTACCCGAGTGAACAAAGCCCTGGACAAGACCCACCGGCAAGGGGCTTCGTTCCTGGGGATCCTGGACATTGCTGGGTTTGAGATCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]