GgaINT0015057 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7646053-7646481:-
Coord C1 exon
chr14:7646363-7646481
Coord A exon
chr14:7646206-7646362
Coord C2 exon
chr14:7646053-7646205
Length
157 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
TACAATTTTCTTTCTTTCAGGCT
3' ss Score
10.84
Exon sequences
Seq C1 exon
CTGCTCAGAAGGTGTGTCACCTGATGGGGATTAATGTGACTGATTTCACAAGATCTATTCTAACCCCAAGGATCAAAGTAGGACGAGATGTTGTTCAGAAAGCTCAGACCAAAGAGCAG
Seq A exon
GTATCTACTTGCAGTCTGCTCTGCTCTCCTAGAGTTATTTTTCCTTTCTTACATCACATCTAAGGGGAATCTGTTTTCTTTCTCTCTTTGCATTATCCTCACTTAACTTAGCAGTTAATTAGATTTCTTCTTTCACTTACAATTTTCTTTCTTTCAG
Seq C2 exon
GCTGACTTTGCCATAGAGGCTTTGGCCAAAGCAAAATTTGAACGTCTCTTCCGTTGGATTCTAACTCGTGTAAACAAAGCTCTTGATAAAACCAAACGACAAGGCGCTTCTTTCTTGGGGATCCTTGATATTGCTGGATTTGAGATTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCAGAAGGTGTGTCAC
R:
GATCCCCAAGAAAGAAGCGCC
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]