RnoINT0096344 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:810712-811636:+
Coord C1 exon
chr10:810712-810830
Coord A exon
chr10:810831-811483
Coord C2 exon
chr10:811484-811636
Length
653 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTCCTTCATTGCCCCTGCAGGCT
3' ss Score
10.07
Exon sequences
Seq C1 exon
CTGCTCAGAAAGTTTGCCACCTTGTGGGGATTAATGTGACAGATTTCACCAGAGCCATCCTGACCCCACGTATAAAAGTTGGACGGGATGTGGTGCAGAAAGCTCAGACCAAAGAACAG
Seq A exon
GTAATGATGCTGTGGCTGTTAATGCTGTAAGCCTTCTATCCATTTATCATCCAACCTATAATACATGACATCTACCCAGTCATCCATCTGCCCACATGTCCATCTATCCACCCACCTAGCTACCAACTCTCCCATTCACCATCTACCCAATCACTCTTCATCTACCTGTCCATCCAAACAATAATCTGACTAACAACTATCCATTCACTATCTACCATCTGTCATCCACCCAGACATCTATTTACCAATTAGCTACCCCTCTACCAACCTACTCATCTATTAGCCATCCATCTACCATTCTTCTACCCAGCCACATATCCCTCTACTTATCCATCTACCCATTCACCTGTATATCTTCCATCTATCTAATACTAAAATATCTGCAGTCCTATGCTAACTTTTTAGGACACTGCTAACCAAAAGCAGAGTCCTCACACATCACTGACCTTAGAGAACCTGACCTGTGGAAATAAATGACTGTATATTTTCAAGAGGCAGGGCTAACAGCCTCTAATTGATCCTTGAATGGAACAAGCTCCACAGGGTTCTCTTGGGTGGCATTTAATTATCTGTCTAGTCACTCCTTAAATCTGACCACTCTTCCTGCTACTTTCCTGCTGCCAATACCCATGTTTCCTTCATTGCCCCTGCAG
Seq C2 exon
GCTGACTTTGCCATTGAGGCCTTAGCCAAGGCCACCTATGAGCGCCTTTTCCGATGGATTCTCAGCCGTGTGAACAAAGCCTTGGATAAGACCCATCGTCAGGGGGCCTCCTTCCTGGGCATTCTGGATATTGCTGGGTTTGAAATCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAGAAAGTTTGCCACCT
R:
CTCAAAGATTTCAAACCCAGCA
Band lengths:
271-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]