BtaINT0097124 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14256808-14258597:-
Coord C1 exon
chr25:14258424-14258597
Coord A exon
chr25:14256923-14258423
Coord C2 exon
chr25:14256808-14256922
Length
1501 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GGTGGGGTGGTCCTTGACAGGTG
3' ss Score
5.22
Exon sequences
Seq C1 exon
ACCAACCCCCCAGGTGTGTTGGCCCTGCTGGACGAGGAGTGCTGGTTCCCCAAAGCCACAGACAAGTCTTTTGTGGAGAAGCTGTGCACGGAGCAGGGCAGCCACCCCAAGTTTCAGAAGCCCAAGCAGCTCAAGGACAAAACTGAATTCTCTATCATCCACTACGCCGGAAAG
Seq A exon
GTACCAGGCAAATGTCCCAGAGGCCTCTTCATCCCAGGGGACCCAAGCAGGATGTTCCAAGTAAGAACAGCTTAGGAGTGGCGGGACCCAGAGGCCTCTGGTGTAAGTCAGACCCCAACTAAGCCTTATACATGATTTGTCTAAGCATCAGTAAGGGACAAGATTTAGAGATATAACATATAATGGGCTAATGTATGTATGATACCTGTATATTAAAGATAGAGAATATATGTGCTATAAAAGGCTAATATATATGTTGTATATTACAGACATATATGAGATGTATATTAGAGAGGCCACTAATATGCTCCAACTATGGTAGCCAGGCTACCCCTGTGGCTCAGCTGGTAAAGAATCTGCCTGCAATGTGGGAGACCTGAGTTCAATCCCTGGGTTGGGAAGATTCCCTGGAGAAGGGAAAGGCTACCCACTCCAATATTCTGGCCCAGAGAATTCCATGGACGGTCCATGGGGTTGCAAAGAGTCAGACAGGACTGAGCAATTTTCACTTTCATGGTAGCCAGGCAGTTCTTTCCTGTATAGACTCTGAACAGGAAGGGCCAGCTGGAATGGGGTGACCAATAAACCAACTTTTGAGTCCAACAGAAATCTCCTTTATCATGGGCCTTGGGTTTGCCATTGCCAGCTTGTGCCACCCCGGAAATCTGTCTTCTATTTCTTCTTTCTCCTCCTTCTTCCCCCCTTTCCCCTACGCGTCTCCTCCATCATCATTGTCATCACCATCATCATCATATTATAGTTCTTAATATACAGGACCTTTCCCTGTGGCTCCGGAGAGGCCTGGATCATGTAGAAAAGACATAACTCAGTCTGGCTTGCAGACATTTATTGACTCCCTGGTATATCCACTACATCATAGAAACAGGCAATACTCCAAACCAGGGGTTGGCGAACTACAGCCCAAGTACCAAACCTGGCCCATGGCCTGTTTTTATAAATAAAGTTCTATTGGCACACAGCCAAGATCAGACCTGCCCATCAGTGTAACAACTCATATAATGTAAAACCCCACCAGAACTATTCGATCAGTTCCTTCCATTTCATAGTCAAAATAGTAAGATTAAAAAGAGGTCCCAGATTTAATTTAAAAGCAGATTGTTGTCAAGCCTTTGCTGGAGGAGAGGTGAATGTTGAGTGTGAGGGGAGGGTATTCGCCACCAGCAAAGCTCCATACCTTTGGGAAATCTCAGGCATCGTGCTGGGCTCTTAAGGAGGAGGCTGCCAGAGGAAGCATACTTGGAGAAGGCAGGGATAGAGACGAGCCTTTCCCGGTAGGTCATGGCTGAGGCCTACTGTGCGCAGGGCCCTTTAAAGTTCTGATTTGTCGGTTCCTTTATTGGTGTTTGTGGATTCCCATTATGGTAGCCACTCATGTTTCCTCTCTGACTTGAGAAGATCCAGGGCAGTGGGGGAAGAAGTCTGGGGCCCTTAGTTCATAACTAAAGCAGAAGCACCTGACTGGTGGGGTGGTCCTTGACAG
Seq C2 exon
GTGGACTACAATGCCAGCGCCTGGCTGACCAAGAACATGGACCCGCTGAATGACAATGTGACTTCCCTCCTCAACGCCTCTTCTGACAAGTTTATGGCCGACCTGTGGAAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGTGTGTTGGCCCT
R:
CCTTCCACAGGTCGGCCATAA
Band lengths:
278-1779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]