BtaINT0097266 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30153083-30153376:-
Coord C1 exon
chr19:30153289-30153376
Coord A exon
chr19:30153201-30153288
Coord C2 exon
chr19:30153083-30153200
Length
88 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ACATGAACATGTATTTGTAGGGG
3' ss Score
4.69
Exon sequences
Seq C1 exon
GAAAATCTGAACAAACTGATGACCAACCTCAGGAGTACCCATCCTCACTTTGTGCGGTGCATCATCCCCAATGAAACGAAGACCCCTG
Seq A exon
GTAAGACATTCCAGAGACGAAGAACAAAGCATGACTGCCATCCCTCCCTTTAATAAAACTCTGCAATAACATGAACATGTATTTGTAG
Seq C2 exon
GGGCCATGGAGCACGAGCTGGTCCTGCACCAGCTGAGGTGTAATGGCGTGCTAGAGGGCATCCGCATCTGCAGGAAGGGCTTCCCCAGCAGAATCCTGTATGCGGACTTCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090:ENSBTAT00000012797:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAACCTCAGGAGTACCCA
R:
CGCATACAGGATTCTGCTGGG
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]