RnoINT0096273 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53723902-53724235:+
Coord C1 exon
chr10:53723902-53723989
Coord A exon
chr10:53723990-53724117
Coord C2 exon
chr10:53724118-53724235
Length
128 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AAATAAACATGTCTTTGCAGGTG
3' ss Score
7.69
Exon sequences
Seq C1 exon
GAGAACTTGAACAAGCTGATGACCAACCTCAGGAGCACCCACCCTCATTTTGTGAGGTGTATCATCCCCAATGAAACCAAGACACCTG
Seq A exon
GTAAGAGTCTCTAGAGTGAAAGCTCAGAGCATGGCTGTCACAGCTCCTGTATTGTATCCCACTGTGAAATAAATGGCTGTCACAGCTCCTGTATTGTATCCCACTGTGAAATAAACATGTCTTTGCAG
Seq C2 exon
GTGCCATGGAGCACGAACTGGTCCTGCACCAGCTGAGGTGTAACGGGGTGCTAGAAGGCATCCGCATCTGCAGGAAGGGGTTCCCCAGCAGGATCCTCTACGCAGACTTCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTGAACAAGCTGATGACCA
R:
TGCTTGAAGTCTGCGTAGAGG
Band lengths:
202-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]