BtaINT0097281 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30160027-30160321:-
Coord C1 exon
chr19:30160207-30160321
Coord A exon
chr19:30160120-30160206
Coord C2 exon
chr19:30160027-30160119
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GCTGTTGTGTTTCTCTGCAGGGG
3' ss Score
10.99
Exon sequences
Seq C1 exon
CGGAGAATCCGGGGCAGGAAAGACTGTGAACACAAAACGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGGGAGAAGAAGAAGGAGGAAATAACTTCAGGCAAAATACAG
Seq A exon
GTGGGTCTGATGGACATGTCAGAATCATGACGGAAAGGGTGCTCAAGAAGCCCCACGTGTGAGCACTGCTGTTGTGTTTCTCTGCAG
Seq C2 exon
GGGACTCTGGAGGATCAGATCATCAGTGCCAATCCACTGCTTGAGGCCTTTGGCAACGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090:ENSBTAT00000012797:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCAGGAAAGACTGTGAAC
R:
GTCATTCCTCACGGTCTTGGC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]