GgaINT0128362 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:497109-497400:-
Coord C1 exon
chr18:497289-497400
Coord A exon
chr18:497202-497288
Coord C2 exon
chr18:497109-497201
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TAACAATTACCATCCTGTAGGGA
3' ss Score
5.68
Exon sequences
Seq C1 exon
CGGAGAATCTGGTGCAGGGAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCAACAATTGCAGCTAGTGGGGAGAAGAAGAAGGAGGAGCAGCCTGGCAAAATGCAG
Seq A exon
GTACATTAAGAGATACTGGCTTGAATCAATGTTTATTATGTTCCTAATTTTTAGAAAGTATACCCCGTAACAATTACCATCCTGTAG
Seq C2 exon
GGAACGCTTGAGGATCAAATCATCAGCGCCAACCCATTGCTAGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCACGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGTGCAGGGAAGACTGT
R:
CCTCACAGTCTTGGCATTTCCA
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]