BtaINT0097335 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21350622-21352177:+
Coord C1 exon
chr10:21350622-21350840
Coord A exon
chr10:21350841-21352033
Coord C2 exon
chr10:21352034-21352177
Length
1193 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
ACTGCCCCTCGCCTCCACAGACG
3' ss Score
10.84
Exon sequences
Seq C1 exon
CCGCAGAGGAACGACAAGATGACCGATGCCCAGATGGCCGATTTTGGGGCGGCAGCCCAGTACCTCCGCAAGTCAGAGAGGGAGCGACTGGAGGCCCAGACACGGCCTTTCGACATCCGCACCGAGTGCTTCGTGCCAGATGACAAGGAGGAGTTTGTCAAGGCCAAGATCCTGTCACGGGAGGGAGGCAAGATCACTGCCGAGACAGAGACTGGCAAG
Seq A exon
GTGCGTGGGACACAGCACAGGGTGGTGGGTGCAGGGGTGGAGCCACGTGCAGTGGCAGCTGAGGGGCTCTAGAAAAGAGCCAAAGCCAGCGGGGGCTCAGGACGATCTCCCCTCAAGTGGCCCAGCATCTGAGTGAGAACTGACCATTCTTGTTGGATCTGAGCAAGTGTAACAAGGCCACCCCAGGGATGCCCACCCCTTGCCAGGGAGGATGCTGCAGGCAGGGAACCTCAGCTGGTTTCCTCCCCAGATGGGTTATGTAGCTAAAGAGGGCACAGACCGCATCAAATGAAGCTCCCTTCTCAAACCTGCATCCCTCCACTCTGTGCCTTAGTTTTCTCCACGGACCAACTCTCCCCAGCGCGCCCCAACCATACCAAGAGCAAATTTACAGATGAACACAAAGCAGGAACTCTTGAGCAGAATGCTCAGTCCAGGGCTGACGACTAGCACTCAGAAGCCCACAGCCCCTGGTCCCTCATGCCAGCTGTGAGAACTGCCACCAGTCAACAGCAGTGGCTCTGAACCGTGTGCCCGGTAGACTGACTGTCTACGAGTCCGACTGTCTACACTGGCTGACTGTCTCGTCCCCTTGAGGTGTGCAGTAACAGGCCACAACCACTGGGGACTTTAACTATGACCCCAACTCTGCCACTAGCAGCCACCATATACTGACAAATCATTGATCATTTGCTCCACTGTAAAAAAAGTGCTGGAATACCTACTCACAGGATCTCATGATGCAAGGGCATGACAAACTGGCCAGTGGCAGTCAAACCATTTGACAGTGACCAGTGAAGAGTGTAGAGTAGATGGGTGAGATGTTTCTCCAGCAGCAGCAAGGTTTGCCCTTAGCAATTGATGCCCTCAAGCATGCCCCCAAGAGTCAGGGTAAGATCAGAGAGCTTCTGCCCCCAGACCCTCAGGGAGGGACTGAAAGGTGATGCTCATGGGCAGAGTCTGGGGAACTGGCAAGACACAGGGACTCTAGGGCAATCCATAAGAAGGGACAGAGAGCAGGAAGGTAAATTATCTGGCGTCATAGGAAGCTATGGGGTAGGGCCCAGGCACTATGAGAAAAGAGCCAGGGGAACAAGGCCAGGTCACAGCCTGTGTTCTGGGAGGAGGTAAGTGGGCAAGTCTAGAGAGGGTCCTGGAAGAAATGTCTGTCCTACTGCCCCTCGCCTCCACAG
Seq C2 exon
ACGGTGACCGTGAAGGAGGACGAGGTGTTGCAGCAGAACCCGCCCAAGTTCGACAAGATCGAGGACATGGCCATGCTGACCTTCCTGCACGAGCCTGCTGTGCTTTTCAACCTCAAAGAGCGATACGCAGCCTGGATGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=49.3)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGACAAGATGACCGATGCC
R:
GATCATCCAGGCTGCGTATCG
Band lengths:
351-1544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development