BtaINT0097359 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64899829-64900235:+
Coord C1 exon
chr13:64899829-64900008
Coord A exon
chr13:64900009-64900102
Coord C2 exon
chr13:64900103-64900235
Length
94 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
ACCTGTCTGGTCTCTGGCAGGTG
3' ss Score
10.59
Exon sequences
Seq C1 exon
CCGCTGGGCATTCTGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAGGCCTCGGATGCCAGCTTCCGGGCCAAGCTCTATGATAACCACGCGGGGAAGTCGCCCAATTTCCAGCAGCCACGGCCTGACAAGAAGCGCAAGTACCAGGCCCACTTTGAGGTGGTCCACTATGCAGGCGTG
Seq A exon
GTAAGTGCCTGTTGAAACCCCAGCTCTTGATCTCCCTCCTCCCTTCCTGCGGTTCCTCCGCCCCTCGGGTCAGCACCTGTCTGGTCTCTGGCAG
Seq C2 exon
GTGCCTTACAGCATCGTGGGCTGGCTGGAGAAAAACAAGGATCCACTGAATGAGACGGTGGTCCCCATCTTCCAGAAGTCGCAGAACAAGCTCTTGGCTACTCTCTACGAGAACTACGCTGGCTCCTGCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTATGATAACCACGCGGG
R:
ACCACCGTCTCATTCAGTGGA
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development