GgaINT0010707 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2956133-2956528:-
Coord C1 exon
chr20:2956349-2956528
Coord A exon
chr20:2956266-2956348
Coord C2 exon
chr20:2956133-2956265
Length
83 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CCTTTCTCCTTTGCCCACAGGTG
3' ss Score
13.45
Exon sequences
Seq C1 exon
CCTCTGGGAATCCTGTCCATCCTCGAAGAGGAGTGCATGTTCCCAAAAGCCTCCGACATGTCATTTAAAGCTAAGCTCTATGACAACCACCTTGGGAAGTCACCCAACTTCCAGAAACCCCGGCCAGATAAGAAGCGGAAATATGAGGCTCACTTTGAGCTGGTGCACTATGCTGGTGTG
Seq A exon
GTATGTCTCTGCCTGCTCTTCTGCAGCACTCACACTCCTCTTGCAGGGCTGAGCTTACCTTTGCCTTTCTCCTTTGCCCACAG
Seq C2 exon
GTGCCGTACAACATCATTGGGTGGCTGGACAAAAACAAGGACCCCCTGAATGAGACAGTGGTGGCCGTCTTTCAAAAATCCCAAAACAAGCTCCTGGCCTCTCTCTATGAGAACTATGTGGGCTCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCAAAAGCCTCCGACAT
R:
TGTTTTTGTCCAGCCACCCAA
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]