BtaINT0097364 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64902864-64903225:+
Coord C1 exon
chr13:64902864-64902987
Coord A exon
chr13:64902988-64903088
Coord C2 exon
chr13:64903089-64903225
Length
101 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGG
5' ss Score
3.63
3' ss Seq
ACCTACCATGCCTACCCCAGGTG
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTACCGCATCCTGAACCCCAGCGCCATCCCGGACGACACCTTCATGGACAGCAGGAAGGCTACAGAGAAGCTGCTGGGCTCACTGGACATCGACCACACCCAGTACCAGTTTGGCCACACCAAG
Seq A exon
GTCGGGGCACAAGGGAGTTAGGGTCCTGACCCGGTGTGGGCACGCACTCTGCAGGGGGTCATGCAGATGATTGAGGGTTATACCTACCATGCCTACCCCAG
Seq C2 exon
GTGTTCTTCAAGGCTGGGCTCCTAGGCGTCTTGGAAGAGCTTCGTGACCAGCGTCTGGCCAAGGTCCTGACGCTGCTGCAGGCGCGGAGCCGGGGCCGCCTGATGCGCCTGGAGTACCAGCGCCTGCTTGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCATCCTGAACCCCAG
R:
TGGTACTCCAGGCGCATCAG
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development