HsaINT0107892 @ hg19
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33580905-33581273:+
Coord C1 exon
chr20:33580905-33581028
Coord A exon
chr20:33581029-33581136
Coord C2 exon
chr20:33581137-33581273
Length
108 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGG
5' ss Score
3.63
3' ss Seq
GTCTACCTCTCCGCCCCCAGGTG
3' ss Score
11.56
Exon sequences
Seq C1 exon
GTACCGTATCCTGAACCCCAGTGCCATCCCGGATGACACCTTCATGGACAGCAGGAAGGCCACAGAGAAACTGCTGGGCTCGCTGGACTTGGATCACACCCAGTACCAGTTTGGCCACACCAAG
Seq A exon
GTCGGGGCACTGTGGGATCAGGGCTGGCCATGGCTGTGGCGGTCACACTGGGCAGGGTTCATGCGGATGGTTGGGGGTTACCCTGGCTGTCTACCTCTCCGCCCCCAG
Seq C2 exon
GTGTTCTTCAAGGCTGGGCTTCTAGGCGTCCTGGAAGAGCTCCGTGACCAGCGCCTGGCCAAGGTGCTGACGCTGCTGCAGGCGCGGAGCCGTGGCCGCCTCATGCGCCTTGAGTACCAGCGCCTGCTGGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-MYH7B:NM_020884:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGAACCCCAGTGCCAT
R:
GCAGGCGCTGGTACTCAAG
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)