BtaINT0097449 @ bosTau6

Intron Retention

Gene

ENSBTAG00000011803 | MYHC-EMBRYONIC

Description

myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]

Coordinates

chr19:30236528-30237131:-

Coord C1 exon

chr19:30236742-30237131

Coord A exon

chr19:30236655-30236741

Coord C2 exon

chr19:30236528-30236654

Length

87 bp

Sequences

Splice sites

5' ss Seq

AAGGTTCGG

5' ss Score

5.96

3' ss Seq

TCCCCTTCCTTACCCTGCAGGCA

3' ss Score

12.19

Exon sequences

Seq C1 exon

GCCCGGATCGAGGAGCTGGAAGAAGAGATCGAGGCCGAGAGGGCGACCCGCGCCAAGACGGAGAAGCAGCGCAGCGACTACGCCCGGGAGCTGGAGGAGCTGAGCGAGCGACTGGAGGAGGCAGGGGGCGTCACGTCCACCCAGATCGAGCTGAACAAGAAGCGGGAGGCCGAGTTCCTGAAGCTGCGCAGGGACCTGGAGGAGGCCACCCTGCAACACGAGGCCATGGTGGCCGCTCTTCGCAAGAAGCATGCGGACAGCGTGGCAGAGCTGGGGGAGCAGATCGACAACCTGCAGAGGGTTAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTTCAAGCTGGAACTCGACGACCTGGGCAGCAACGTGGAGAGCGTGTCCAAGTCTAAG

Seq A exon

GTTCGGGGGTGGGAGGCGCGGGGCTCCCACCATTGGCCCTCCACACCTGAGCACTGACTGAGCTCTCTCCCCTTCCTTACCCTGCAG

Seq C2 exon

GCAAATCTGGAGAAGATCTGCCGCACCCTGGAGGACCAGTTAAGCGAGGCCCGGGGCAAGAACGAGGAGATTCAGAGGAGCCTGAGCGAGCTGAGTACCCAGAAGTCCCGGCTGCAGACAGAGGCTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000011803:ENSBTAT00000001120:29

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.315 A=NA C2=0.628

Domain overlap (PFAM):

C1:

PF0003816=Filament=FE(46.6=100),PF0157614=Myosin_tail_1=FE(25.8=100),PF131661=AAA_13=FE(64.2=100),PF104734=CENP-F_leu_zip=PU(41.1=44.6),PF045827=Reo_sigmaC=PU(29.9=33.1)

A:

NA

C2:

PF0003816=Filament=FE(15.2=100),PF0157614=Myosin_tail_1=FE(8.4=100),PF131661=AAA_13=FE(20.9=100),PF104734=CENP-F_leu_zip=FE(29.8=100),PF045827=Reo_sigmaC=FE(29.2=100),PF059116=DUF869=PU(39.0=90.7),PF0003816=Filament=PU(3.2=20.9)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSBTAP00000001120