BtaINT0098041 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77324683-77326209:+
Coord C1 exon
chr4:77324683-77324753
Coord A exon
chr4:77324754-77326134
Coord C2 exon
chr4:77326135-77326209
Length
1381 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGG
5' ss Score
7.47
3' ss Seq
CTCCCCCGGACCTCCCCCAGGTA
3' ss Score
8.51
Exon sequences
Seq C1 exon
CTCTGCCCCACAGACAAGACCATGGAGTTTGGCCGAGACTTCCGGATCAAGCACTATGCAGGGGATGTCAC
Seq A exon
GTAAGGGGCCCCCACTGGGCATCTGGTTCCCCCCCCTCCACCGCCCCCTCCCCTTTTTAAGACACTGGAAATATGCTCTTCACCAGATTCACAAATGAGAAATATCAATTAGGGCTTTTAAGATAGTGATTCTTAGCCCTGGCTGCATCCTAGAATCTTCTGGGCAGCTTTAAAAAAGAAAAAGCCAATTTCTGATAGAGCGGCTGGAGACTCAGAGGTGCAGCTAGGGTGGGACCTCTGTTCTGAGCCCAGGGCCAGTACTTTTATTTTTAAAAAATTCTTTCTTTCTTTATTGGCTGTGCTGGATTTTTGTTGCTGTGTGGACGTTTCTCTAGTTGCAGAGAGCAGGGGATACTCTCTAGTTTTGGTGCACAGGCTTCCCACTGTAGTGGCTTCTCTTGTTGCAGAGCACAGGCTCTAGGGTTCACAGCCTTCAGTGGTTGCGGCTCCCAGGCTCAACAGTTGTGGAGCATGGGTTTAGCTGCTCTGTGGCACGTGGGATGTTCCCAGACCAGGGACTAAACCCACGTCCCCTGCATTGGCAGGCAGATTCTTTACCATTGAGCATCAGGAAAGCCCTGGGGCCAGTTCTTGTCACCTTTTGTCAGCGAGGAGGAACAGAGAGGCCAGATGATGTGTTTCTAATGAGCTCCCAGGCGAGGTGGACATGGCCAGTCCTCAGGCCACACACTGAGCGCCAAAGTCCCTACTGTCTTCCAGAAGTGGCCATGATTATTATTAATTCCCCTGTCACACATCTCACCCGGAATTGGATCAGAGGTGACTCACAGAGAAAGACACAAGTCTCCCACGTGTCCTTCATGAGGAGAAGAAATAGAATCGAAAAGACGAAGCTGCCAGGAGTCAGATCCCATGGCCCTGAGACTTTCTAGGAACTGCAAGTGAAGCCAAGATTTTGGCACTGAGCTTTCTAGCAAAGGCTAGAATGATGAATCTGAGGTCCTCCAGGCCAAGGAGCCAAACAGACCAATGACTCAGGATTTCCTGGTTGTAACTGCAATCGCTGACATTTATTTATGGAAACTCAGTAGGCACTGTTCTGAGGGTGTGATGTCTACTGAGGCACAGAGAGTTTAAGTCACTTGTCCCAGATCACACAGCATGTATGTGCTAAAGCCAGGATTCAGTGATGCAACATTTGGCTCCGTGGGCATAACCCCTTGACTCATCTTTCAGGAGAGAAACTTCTGAGGGAAGAGGTCTTATATGATGAGAGGGAAAGCAGACAGGAGAGGGGAAGGAAGAGGAGCACGTGAGGAAAAAGGAAGGGAGGCTGACCAGATGGGAGGAGGGGGAGGGGCATACTAGGGGGTCAGAAGCCCCTTACCTCCTCACTGGCCCTCCCCCGGACCTCCCCCAG
Seq C2 exon
GTACTCCGTGGAGGGCTTCATTGATAAGAACAGAGACTTCCTCTTCCAGGACTTCAAGCGTCTGCTGTACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377:ENSBTAT00000008366:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]