Special

RnoINT0097140 @ rn6

Intron Retention

Gene
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86787424-86789915:-
Coord C1 exon
chr14:86789845-86789915
Coord A exon
chr14:86787499-86789844
Coord C2 exon
chr14:86787424-86787498
Length
2346 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
CCTACCCTGGTATTGGTCAGGTA
3' ss Score
4.32
Exon sequences
Seq C1 exon
CTTTGCCCTACGGACAAGACCATGGAGTTTGGCCGAGACTTCCAGATCAAACACTATGCAGGGGATGTCAC
Seq A exon
GTAAGTCCCACCCAAAGTCCCAGGAAGCATAGATACAGGACAAAATTTTATGTTTCGCCCCATCTGTATGCATCTAGAAGTTCTTTTAAAATACTCAGGTCAGGGGCTGGAGAGATGACTCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGTCCTATTCTGGTGTGTCTGAAGACAGCGACAGTGTACTCCTCATATACATACATAACTCTTAAAAAAAAATACGCAGGTCAAACCAGGCATGGTGGCATACACCTTAATCCCAGCACTTGGAAGGCAAAAGGAGGCAGATGTCTGTAAGTTCAAGGGCATCCTGCTTTACATAATGACTTCCAGGACAGCCAGGGCTACATAATGAGAGACTCTGTTAACAAGAACAACAGAAAAACTAATAGCAAAATATCCACTCCTGAGCCCTGCTCTATCCCTGTTATTTGAAGGACTTTCAAGTTGAAAAGTGAATCCCAGAAAGCCAGAATCCTGCATTTCCTTCCCCCCCTTTTTTCTTCTCTTTCTTCTTTTTCCTTCCTTCTTCCCTTCCCTTCCCTTCCCCTTCCTTACTTCCTTTATTTCTTCTTTCTTTTTTGGCTCTGAAGATCAAACTTGGCGCGCTGTGTGCATGGTAGGCAAGCGCTGTACTGGTGAGCTGCCTCCAGCCCTTATATATTCTACCTACGTTGTGACTACACAGCCCAGTCTGACCCAGAGCCTGCCGTTCCCCCGCCTCAGCCTTCCAGTTGGGATTATGGATGTGTACCACCATGTCCTGGTTAAGATCCTGCATTGATTAGTCCCCAGGTGAGGGCTCACCGCAGTCCCCAGACACCTGTCCTAGTTTGCTTTCTATTGCTATGATAAAGACGATGACCAAAAGCAACTTTGGGAGCAAAAGGTTTATTTCAGTCGCATAACGCATTTGCAGCTCATCACGGAGGGCAATAGGGGCAGGACTGAAGCACAGGCCATGGAGAAATGATGCTTGGTGCTTTCTTACCTTGGCTCCCTCAGCCTGCTTTCTTACGGAACCCAGGACCACCTTCCCAGGGATGGTTCTGCTCACAGCGGTCTGTGCTCTATCACATCAGTCAAGAAAATGTCCCAGGGTTGGAGAGATGGCTGGGGGCTTAGGAGCACTGTCTGCCCTTCTAGAGAACTTGGGTTTAATTCCCAGAACCTACACTACAGCTTAGAGCTGTCTGTAACTCTAGTCTTAGGGGATCTGACGCCTTCTTCTGGTCTCTATGGTCCCATAGACACTCATAGACACACCCATACCCATGAAATAAAAATAAACAGATGAATCTTTTAGAGATTATGAAACAGAAAACATCCCACAGACTCGCCTACAATCTAATGGAGGCATTTTCTTAATTGAGGTTCCCAATTCTCAGACAACTTGTTTCAAGTTGTCAGAAACTACCCAGCACACCGCCTCTGAGCATCGAAGCCTAGATTTTCCTTCTGGAGTTGTCATGACAACTAATAATTTACCCCTCCTCGTTCCTCTCTAAAGTGGATTTGAGGCAACTCGGAGAAATACAGTGTTTGATGTAAGCTTCCCAAGGAGAGAAAATAGACAATCATATACCTGTTCCCAGTAACCCATGCCTTTGGTCTTCACTAGTGCTACAAACAGAACCAATCAATATTTATCAATAAACTTTCTAGTAGTCCAAGAACCAAATAATCATTCTGGGGCTCCCATGTCTATGTCACAAGGTTGAAGTTCATCATAACTGTAATTGCTGGTATTTGTAGAAACTCAGTAGACTCGGTTCAAGTACTTTTTAAATTAATTTATTTATTTTATGTATGTGAGTACACCGTCAGACACCCCAGAAGAGGACATTGAATCCCATTACAGATGGTTATGAGTCACCATGTAGTTGCTGGAAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGCACTCTTAACCACTGAGTCATCTCTCCAGCCCCTTGGTTCAAGTCTTTAATGTACATGGAGGAGCACAGAAATTGCATGGCTCTTCCAAAGCCACCCAGTGCACATGTGGAAAATGTAGGACTTGGTGCTGGGACGCCTGGCTTCAGACCTGGGGCCTTAGCCTCTGAGTCCTTTTCCAGGACGGAAAACTTAATCTGAGGAGAACAAGTGTAGGTAACAAGGAGAATGCAGATGTGAGAGACCCAGCAGAGGGTAGCAGGCTGGAAGAAACTGAGCCAGGAAATTAGAGATAGGTGACAGAAGGTGGGGACCTTCTTGGAAGCCTGTCCCTTAATCTACTCTCCTACCCTGGTATTGGTCAG
Seq C2 exon
GTACTCTGTGGAAGGCTTCATTGACAAGAATAGAGACTCTCTCTTCCAGGACTTCAAACGGCTGCTGTACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]