BtaINT0098147 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58026028-58026509:+
Coord C1 exon
chr10:58026028-58026054
Coord A exon
chr10:58026055-58026398
Coord C2 exon
chr10:58026399-58026509
Length
344 bp
Sequences
Splice sites
5' ss Seq
AAGGCTATT
5' ss Score
-3.61
3' ss Seq
TTTTTCTTCTTGTCTTCTAGTTT
3' ss Score
10.92
Exon sequences
Seq C1 exon
ATAAGGCAAAGTCAAATTTTAATCAAG
Seq A exon
GCTATTTCTTCAGAGCATAGTTTCCCCCACTTCCATAGTGTTATTGAGATAGAATTGACATACTGCATTGTATGAGTTTAAGGTGTATGGCATAATGATTGGAATTGCATATATTGTGAAATTATTACCACAATACAGAGCATTGTGCCTTTTAATAATGTGGACTTATGGTACTACTGAGGCTAAAGTACTTTTCATCTGCTAATTTAAAAGTTAAATTTCATATTTGCTGAGTTTTATTTTGTTCATAAACTGTTTAATTATAAATACATCCATGATTTTTTAATATCATTATAAAGTAATTGAATTGCTGGTTTAAATATTTTTTTCTTCTTGTCTTCTAG
Seq C2 exon
TTTGCCAGGGTTTGGATACCTGATCCTGAAGAAGTTTGGAAGTCAGCAGAGCTGCTCAAAGATTATAAGCCAGGAGATAAAGTTCTCCTGCTTCAACTTGAGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development