BtaINT0098188 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58215008-58217173:+
Coord C1 exon
chr10:58215008-58215148
Coord A exon
chr10:58215149-58217047
Coord C2 exon
chr10:58217048-58217173
Length
1899 bp
Sequences
Splice sites
5' ss Seq
TTGGTAACT
5' ss Score
4.27
3' ss Seq
GGTTTGCTTTTCTCTTCCAGTTA
3' ss Score
9.07
Exon sequences
Seq C1 exon
CATGTCTTTAAACTTGAACAAGAAGAGTATATGAAGGAAGACATTCCTTGGACTCTGATAGACTTTTATGACAACCAACCAGTCATTGACCTGATTGAAGCAAAAATGGGCATTTTGGAGTTACTGGATGAAGAATGCTTG
Seq A exon
GTAACTTTTAAAAATAATTTTCTTTAACTTCAGAGCAATAATAGATGAGCCTATTTCCAAATAGAATTTTTAAAAATCTACATGTAAATTCCTGATTGATCAATTACCAGTTGATTGGCTGTTAATTCTGGGACAGCAGTCCATAGCAGGAACCCCAGGAGGCCGGGTAAATCTCCCACCCTCAGCATGTATAGCCCACCCATGGGTAACATGCATGACCTCTTAGGTCATGTCCAGCAGGGAGGAGCCCTTTGAAGCTGTCTCTGGGTGTGTATATAGAGTAGACATGGAAACAGCAAGTGACCACACTCCAGTTGTTAATGACTAACAGGAATTGAGTTTTCTCTTACTTCCTGATTCCATGAGTCATCCACTGGGAGGTACAGCTGAAAAATCAACATCATACAATTGAGAAAAGAGTCTCTAGGAATTTTCCTATTGTTATTACCCTCTGGGAGGAACAACTTTATAGTGAGTCAGCCTAGCAGTGGCCTTCATGGGGCCATAGGAAAAAATAACCCTTAGGACGATATTTGGTCTTTTTGGTTGGAAATTGATATTTTAATGTTTAAACACATTTTTTTTCCAAAGATTTATCACCCCCTTCCATGCTCAGATGGTAAAGCGTCTTGCTTACAATGTGGAAGACCTGGGTTCAATCCCTGAATCAGGAAGATCCTCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCTTGGACAGAGAAGCGTGGTAGGCTACAGTCCCTGGGGTCGCAAAGAATCAGACACGACTGAACGACTTCACTTGTCCATGATTATAATGTTGAAGACGTACTGGTATTTTCTCCCTATAATTCTCAATTCCATGGTTCTTCTCACAAACCATCCTTTCTGATGCCACCTATGTTTTAGTCCCTGCAGTGATGTAAGATTAAAAGGCAAGCACCAAGGCCAAACATTCTGGAATGATCTACTGGAGGCAGGGTTCAGAGGCCAGTGTGGGCTCTAGGAATATTTGTACCAAATCTACAGAGCTTCCCTGTTGACTCAGATGGTAAAGAATCTCCCTGCAACACAGGAGACCTGTGTTGCATCCCTGGGTTGGGAAGATCCCCTGGAGGAGAAAATGGCTGCCCACTCCAGTATTCTTGCCTGAAGAATCCCATGGACAGGAGGAGCCTGGCGGGCGACAGTCCCTAACATCTCAAAGAGTTGGATTCAACTGAGTGACTAACACTACAGAGATAGTCCCTAGGTGACCAGTGTCACAAAGAAGTTTGCAGATGTCATTTGGACACTATGTAGTATTAGATTCACAGAGTTCAGGCTGAATATAGCTGGTGATAGCTTCAAAATCACCAGTATCAAGAACAAGTTCTGCAACTAGCTTAGTGTAAGTAGTTAAGACCTTAGTTCAAGGAGGGAGTTATTAACTAGGCAGTAAAACAAAAGAAAAATTCTTCCTGAGGCGGGAGATGGAAAGGACTACATTTCGGTGCCAACCTTTCTCCATTCAACCAAGAATAAAAATTGTTTTCACCTAATGGAATTTATGCTACTTTTTCCTGAATCTTTAGACTACTTTGGGAAAAAATATTAAAATACTGCCAGTTTTGCAGAAATAAATCCTTATATGATTATATCACTGTTTCCTTTTCATTGATAACATCTTGTTCTTCTAAAAGAGCATTGATAAAATGTCTATTGAAATATCACTGTAAATAATAAGATCAAAGACAGACTCTTGCCTCTATTGCTGTTAAAAAAGGAGCCTCCCATGTCAAGCAGTCCACTTGGAAGTGCAGCTCATCTTGGTTTCTTAGAATTAGCACTTTTCCTCCCCTTGGTTAATCTTTTGTCTCTGGTTGTCTTACTTGCTATTTGGTTTGCTTTTCTCTTCCAG
Seq C2 exon
TTACCACATGGGACTGATGAAAACTGGCTTCAAAAGCTGTATAATAATTTTGTCAACAAAAACTCTTTGTTTGAAAAACCCAGAATGTCAAACACCTCCTTTATCATCCAGCACTTTGCAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTTAAACTTGAACAAGAAGAGT
R:
ATCTGCAAAGTGCTGGATGAT
Band lengths:
262-2161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development