GgaINT0029272 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:10100237-10100768:+
Coord C1 exon
chr10:10100237-10100377
Coord A exon
chr10:10100378-10100642
Coord C2 exon
chr10:10100643-10100768
Length
265 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATG
5' ss Score
4.83
3' ss Seq
CTCCCTTCTCGCTTTTACAGTTG
3' ss Score
11.72
Exon sequences
Seq C1 exon
CATGTATTTAAACTTGAACAAGAGGAATATATGAAGGAAGATATCCCATGGACATTAATAGACTTTTACGACAACCAGCCTGTCATTGACCTTATTGAAGCCAAGATGGGAATTTTAGAGCTTTTGGATGAAGAGTGCTTG
Seq A exon
GTAATGTGAAAATGATTGCATGTGTGAGCTCATATAAAAACTACAAAAGGAATAGGAATGTTTGACCTCTGTTGGGTGATTTTAGTTGTACGCTACGAATCCAAAAGTAGGTTCTTAGCTAGGAGATGACTCAGCAGCTCATTCTCCTCACCGTGTGGTCAGTGGGGCACTGGAACAGGCTAAGCAGAAATGCACTGGGGTCCCCTTCCTTGGAAGGCTCTTTGGGCTGAACTTTGTGAAGGTATCTCCCTTCTCGCTTTTACAG
Seq C2 exon
TTGCCCCATGGAACAGATGAAAACTGGCTTCAAAAGCTATATAATAATTTTGTCAACAAAAACACACTCTTTGAAAAGCCGAGGATGTCAAACACGTCTTTCATCATTCAACACTTTGCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAACAAGAGGAATATATGAAGG
R:
TCAGCAAAGTGTTGAATGATGAA
Band lengths:
252-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]