BtaINT0098215 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58253554-58257169:+
Coord C1 exon
chr10:58253554-58253641
Coord A exon
chr10:58253642-58257070
Coord C2 exon
chr10:58257071-58257169
Length
3429 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
TTATTTGCCTCTGCCTACAGCCA
3' ss Score
9.08
Exon sequences
Seq C1 exon
GATCTTGAAGAAGAGTTAGACATGAAGGAAAGAGTGATTAAAAAGTTACAAGATCAAGTGAAGACTCTTACCAAGACAATTGAAAAAG
Seq A exon
GTAGAAAAACAACATCCATGTTCCAATTTTTTTGAACTTTCAGCTACAGTTTACATGTGTTGACATATTACTTCCTGATGTGGTCCAAAGAATTTGAAAACTAAAGAAATGAGTCTCCGCTGGTGTGTTTGGGGCCCAGTGATGGGCTAGTGGAGATCCTTAAAGGCAGGCAGGTGGCTCACCACCTCTCAGGTGATACCAGATGTGCTCATGTAATTGTAAGGGGTACCCTGAAAGGAATGCTTTTAACCTCTTTCTCTGTTAACTCGTTGTTAAAATGGAATTGTGAAAACGTTTCAGATTTAACTGCTTTAAAGTTTATTTCCTCTCTGTTACATGGGGTCAATATCCTACTTTCTATTAGAAGAAAAGATACTAGATAGCTAATTAGATATCTATTAGATAGCTAAGAAGCCAGACTGAAGTCCTCAACATGAACTGAATTGCACACTGAGTGTCCTTATAAGTTCCAGGGAAAAAGATTCTCTGCCTTTCTTTCGTTCGCCTGATTCTGTGTCACTGAATTTTTCTTTTTTTTAAATTGATTTTTAATTGGAAGATAATTGCTTTACGATGCTATGCTGGTTTCTGCCATACAACAGTGTGAATCAACCATAAGTACACATACGTCCCCTCCCTCTTCAGCCTCCCTCCCACCCGCCATCCCACCCCTCCAGGTTGTCACAGAGTGTCCATAGGTTGAGTTTCCTATGTTGTGCATAGCTTCCCACTGGCCGTCTGTTTTACATATGGTAATATATATGTCCAGTGCTTCTCTCGAATTCACCCCACCCTCTCCTTCCCCTGCTGTGTCCACACGTCTGGTCTCTATGTCTGTGTCTCTATTCCTGCCCTGCAAATAGTCACTGAAACATTCTGACTTTTCTCATCTAACTCTTTACTCATTTGTTCAATATTGCTGCTTTCTCCCAATCTCTGTCACTAAGGTTGTATCTGCAACTCTCTGTTCCTTTTACTATCCTCATTTCTTTGAAGAACTCCTTTATTGGTTTTTTTTTTCAACTTTTCATCAGACTTTAAGTTTCCAAAACCAAAATGAGGCTCTTTTCCTTTCCATAATTATTGATAAAGGTCATTCTGCCCCATGAGGGAAGAGACCATGTCTGTCCTTCCCATTACCCCATGGTATCCCCATTGTGGGAAAGAATGAATCAACTGCCGTCTCTACGTAAGGACTTCCAAAATCCACCTGCCGTTCCTCACTTTTCCTGAGTCCTACTCCCTTTTTGCCTCTAAGATTACTCCTTCACCTTTCTATTATCACCTCCAGCCCAACTTGTTTTAAGTGGAATGCATCAGCTTCCATTCCTGTATCAGGTATCTATTGATCATATAACAAACTACTCCCAAATTTAGTAGCTTAAAATGACAAACACTTAACAGTGCAATTTCTGAAGGTCGAGAATCTATAAGCAGCTCAGCTGGCTGGTTCTAGCTGAGTCACAGTAGAGTAGTCAGCAAGGATGCTGACATCTGAAGGCTTAGCTGGAGCTGGAGTACCTGCTTCCAGGCTCACTCACATGACTGTTGTCAGGAAAAGCCAGTACCTCTAGGACACTCTTTAGGTGGCACGAGCTCCCAAGAAACATGCTCAGATACAAGTCACCACACTTAAGAATACCCAAAATAGGATGTCCTTATCAGGTGCTTCTGCATCATTTATTGGTTTTCCCCGTCTAGATGGAGTTCAGCAATCAGTGGTCCTTCTTACCATAAACAGGTTGCTTAGTAAAATAGTTAACATTCTACCTTTATCAGTCTTCAAGGGAACAGGGCTGGTAAATCACAGAACAAACTCTCATGCAGTAGAAGAGAGTTCTGTTCATTCTTTACCTGTATTATCTTCTTTCTCACCCATCAGAGCCTACTCACTTTTCTTGGCCCAGCTGGAGTGCTACCTCCTTCAAGAACCATTTTTCAACAGTTCTTACTTACCTCTGCACAAATTCTTATGTCCTCTGTATTTATTTTTTATGGCTGCTTAGCAAATCACCGTGAAATTAGTGGCTTAATAGAACATGAAACTTACAGTTCTGGATGTCAGAAGTTCAAAATAGTGTTCACTGGCTTAAAATCAACACGTCAGCAGGGCTTCTGGAGGCTTTAGGAGGAGATTCCATTCCCTTGCCTTTTCCAGCTTCTAGAGGCCACCCACTTTTCCTGACTTGTGGGCCTCTTTCACCATCTTCAAATTTGGCAGCATAAAATCTTTGGAATCATTCTGACATTCTAACTTGTACTTCTATAAGTCACATCTCCTCTCAGAGTGGACATGAGTCTTTGGGGACCAGAAGGCAGACTGTGGCCCACCCAAAGATGTCCACATCCCAATCCCCAGAACCTATGAATATATGACTCTACATGGCAGAGGGATTTTGTATATGTGAGTATGTGAGTATTTTTTTTTAATTATTTGTTTAGCTGCCTCAGGTCTTAGCTGTGGCAAGCCGGATCTTCATTCATCATCTTTTGTTGTGGTGCACTAACTCTAGTTGTGGACATGGGCTCCAGAGCACATGGGCTCAATAGCTGTGGTACACAGGCTTAGTTGCTCCATGGTATGTGGAATCTTAGTACCCCGACCAAGGATTGAACCCATGTCCCCTGCATTGAAGGGGGATTCTTAACCACTGGACCACCAAGGGGAGTCCCTACGTGAAGGATCTTGAGATGAGGAGATCTACTTGGATCATCCAAATAGATCCAATATAATCACAAGAGACTTTGTAAGAAAGAGACAGGAATGACAGAGTGAGGGAAGGTGATGGAAGCAGAGAGAGAGAAAGAAGTGATGATAGAAGCAGAGGTCAGAGTGATGTGGCCAGAGCCAAAGAATGTGGTCAGCCTCTAGAAACTGGAAAAGGCAAGAAATGAATTCTCCACTAGAGCCTCCAGAAGAAAAACAGCTCTGCTGACATTTCGATTTTTGTACTGTAAGATCTGTTTTAGTCTATGAACTCCAGAACTGTAAGATTTTTTAAATTGTAGTTTAAAAAATTTTTGTTTTATGCCACTGTAACAGTGGCATAAAACAGCACATAGGAAACTAGTCCAGCCACCTTGGGATCATGCTGTTTGGTGACTGCACACTACATGTTTTGTGAATCTCGTTTTTTTTTAACTGTAATAAGGCAGAAGCAATATCCTGTATTGCTTTCATATCCCTACTGCACTCATTATATACCAGGTGACCATGAGAAAATACACTGGCAGCTATACTCATGGATATACTCATAGATAAGAATTGCTACCAGAAGAAATTCTTCAGGCTTCAATAAAGTTTGCATTTATCAGAAAGCCAGAGCATTTTATGGGCAAATCAGCCAGAATGGGATGGAAAGAGATGGAGTAGTCTCATTATAATGCTTGTTATTGTGTATTTAGCTGATTATTTGCCTCTGCCTACAG
Seq C2 exon
CCAATGACGTGCACCTGTCCTCAGGACCCAAGGAGTACCTTGGAATGCTGGAATACAAGAGAGAAGATGAGGCCAAGCTCATTCAAAACCTCATTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(13.4=100)
A:
NA
C2:
PF131661=AAA_13=PD(6.5=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development