RnoINT0097318 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82233583-82235252:+
Coord C1 exon
chr8:82233583-82233670
Coord A exon
chr8:82233671-82235153
Coord C2 exon
chr8:82235154-82235252
Length
1483 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCGTTTACCTCTGTCTGCAGCCA
3' ss Score
8.95
Exon sequences
Seq C1 exon
GATCTTGAGGAAGAGTTAGACATGAAGGACAGGATGATTAGGAAGCTACAGGATCAAGTCAAGACTCTGACCAGGACGATTGAAAAAG
Seq A exon
GTAAGGTGGGGTGGGGAGAGCCTCGTTCTTTTGAGCTTTTAGGTAAGGTGCTGTGTACGGAAGTGTGTGAGCACTGCCTTGTCCAAAGCACACCAACCCCAAGGAGATGAGGCTCCACAGGTCAGGCTTAGGACCCGGGATGAGCTGAAGAGCTTTGGGGACACAGAGGCCACTGCATCTGATACCACATTCTCTCCTTCCATGAGACAAACACATTCTCCACTTCCTCTGTCAGTTCCACCTTTTCAAAATGAATTTGTGATGGAGTGTCCAATTAATCATTCTGAAGACTACACAGATACTGGGTCCATGAGTACCGCAGTCCCTGTTAGCAGAGATAGAGAGAGAGAAGATGGACTGGCATCCTGACCCCAGCTGAATGGCGTGTGTAGCCATGAGACCCAAGGGAAGGAGCCTTCCTTCCTTCCCTCTGCCCTGGAGTCCATGTCCCTTCGAGTCTTCCACTCTCGTCTCCTGGTCCTCACACTTCCGTTCTGTACTCTTCCTCTCCATCCCAGCCTTGCTAGCACAGGCTGCACGGCAGCCATGTCTGTCTGTCCCTCTGCTTGCTCCTTGGAAGAGCTCCTTTATTCTTAGGTACTCCACATTTGCCTTACACTTGAAATAGCGGCAGACACGGCTACTGAGCTGTAAATGCTTCAGCTGAGTTGAGACTCCTTCCTCTTTGGGAATAGATGTCACTGACCCATCTGCCCCGGGAGAGCAGGACCAGGTCTGGACTCCCACTCTTTATGTCTCTACCGTTGGAATTGGTGAATGGATGGACTTACGGATAGATAATGGACTGATGGATGAGTGGATGGCGAGTGAATAGATGGATGGTGCGTGAATGGTAGATGAATGGCAGGGGATGGACGGATGATGGGTAAATGGGTATATGATGGAGGGATGAAAGGTAGGCTAGGGGGATGAGTGGAAGATAGATGGAGGACGGTGGGATGAACAGAACCACGAGCTACATTCTCTAGAATGCCTACCCAAACCCACATCTAACCCTCGCTTCTTTTCCTGAGCCCCAGATTCGGTTTGTCTCTTTGACCACTTCCTTTCAACTCGACACATTTCCAAATCTTTTCTGCCTGTATCAGTTATCCATTACTAGGTAACACACTATCCCACACTCAGTAGCCCAACATTAACACCACTACGTTTGTGAGTAAAGGAGTCTTGCACCCTTCCCTGTAGATAGCATCAGGGCACTCTCTTGGGTTTCTTCCCCTCCCCCAATGTGCTGGAGCCGCATCAGACACTCAGTAGATTCATTCAAGGACATCTCAGCCTTTTCAGCAGTGGCCACTCCTGGACAGAAATCACCACAGAGAGAGATCTAAAGCATCAAACAACTCTAACAGCTGCAAGCCGCGGCCATTCCTGAGTGGAGAGGACTCGGATGGTATCTTCACTGTGAAACCGGGAGGTGTGGGCTCTGTGTATGTAGCTGACCGTTTACCTCTGTCTGCAG
Seq C2 exon
CCAACAGTGTGCCCCTGCCCTCGGGATCCAGGGAGTACCTGGGAATGCTGGAGTACAAGAAAGAAGACGAGACCAAGCTCATTCAAAACCTCATTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(15.4=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAGGAAGAGTTAGACATGAAGG
R:
GAATGAGGTTTTGAATGAGCTTGGT
Band lengths:
182-1665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]