RnoEX0057427 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82233583-82235108:+
Coord C1 exon
chr8:82233583-82233670
Coord A exon
chr8:82234268-82234403
Coord C2 exon
chr8:82234970-82235108
Length
136 bp
Sequences
Splice sites
3' ss Seq
AAGAGCTCCTTTATTCTTAGGTA
3' ss Score
5.21
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GATCTTGAGGAAGAGTTAGACATGAAGGACAGGATGATTAGGAAGCTACAGGATCAAGTCAAGACTCTGACCAGGACGATTGAAAAAG
Seq A exon
GTACTCCACATTTGCCTTACACTTGAAATAGCGGCAGACACGGCTACTGAGCTGTAAATGCTTCAGCTGAGTTGAGACTCCTTCCTCTTTGGGAATAGATGTCACTGACCCATCTGCCCCGGGAGAGCAGGACCAG
Seq C2 exon
CCTTTTCAGCAGTGGCCACTCCTGGACAGAAATCACCACAGAGAGAGATCTAAAGCATCAAACAACTCTAACAGCTGCAAGCCGCGGCCATTCCTGAGTGGAGAGGACTCGGATGGTATCTTCACTGTGAAACCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'45-48,'45-47,46-48
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(15.4=100)
A:
PF131661=AAA_13=PD(1.6=33.3)
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000011768fB9262
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTGAGGAAGAGTTAGACATGA
R:
CTCCCGGTTTCACAGTGAAGA
Band lengths:
227-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]