BtaINT0098216 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58257071-58258595:+
Coord C1 exon
chr10:58257071-58257169
Coord A exon
chr10:58257170-58258440
Coord C2 exon
chr10:58258441-58258595
Length
1271 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATG
5' ss Score
4.83
3' ss Seq
ACCGACTCTCTGTGCTCCAGACC
3' ss Score
7.61
Exon sequences
Seq C1 exon
CCAATGACGTGCACCTGTCCTCAGGACCCAAGGAGTACCTTGGAATGCTGGAATACAAGAGAGAAGATGAGGCCAAGCTCATTCAAAACCTCATTCTTG
Seq A exon
GTAATGAAACCTGGGACTCTGAATTTTTGCTTAATTTTTGAGAACTTGAGCCTTAGTCATTGCCACGGTCTTGGGCAGGGATGATAGTTCCTCTTTTTCCTCCACTGCTTCTTCCCCTAGCACAGAGCTTCTCAGCCTCATTTTTGACCATGTGATTCTTTGTTTCGGGTGGATAGGGGCTTTGTATTGTAGGATATTGAGCAGTATCATTGGCTTCTATTCTCTAGAATCCAGTGGCAACCCCTAATCATGACAATAAAAAAAAAATGCTGTCAGACATTGCCACATGCCTTCTGGCATCTGCTACCTTGCCTTCAGTTGAGATGCACTACCCTAACCTCTTCCCAAGTCTCATCACATGGTCAGGGTAGAAGACACACCTCCTCATCTTTGTGGTTTAGCACAGGAGTCTTGGGAGAAGTAACCGTGGCTCCCTTGTTCCATTTGCCTTCTGCTGAGAAATTCGTTTGTGTGGCAGGGCCTTCTCAGCCATGGCTATTACAGGAATCTCCCAATTGGCATGCTCTATGGTTGGCAGTCTTAGAACCAGTGCTACTAGCCTGCCTGTCGTCACCATGGAAACCACATAGTCTTCTAGGGAGAAGGAGAAAAACTGCCTCCCTATCAGCTGATCCCAGGATCTCAAAGCAGAAAGCCCATGTATAGCCTTACTCCTCTTCTCCTAAGTGACCCTCCCCAGAGCACAGGAGCCGCCTACCCATTCTTTTCCACCCCGCACTGGTACACAGCTGAGGGGCCTCTTTGTTCCCCTGTCCTAATGCAGACATGGGGAGGTCTTTGTTTGCTTTTCTTAACTTGTTCTATAAAGTTTCTCTCTACATCCCTACTCCGACTTCCAGCCATTCTCTTCTCCTCAAGGCCAACTGATCCTCCTCTGCAGGACTGTTGTACACCTGTTTTCTCTATTCATGGCAGAGGCATGTGATTGCTAAGATCATTCCATCCTCATCATAGAGGCTGAAGTGGGGGTGCATGGACTGGGGTTCCTCTCTTACCTTGGAGATATGAAATTCTGTCTTTTATTCAACCTTGGAAAAGAGAAAATACTTTGCAAATGAGAAGTAAGAGAAGCAGGTGGCACCTGCATGTATATTTTTGCTAAGAAAAAAAGCCAGCCTTAATTCCTCAAAGGGAAAAAACATCTCTGGGTATTCAGGCACTGCATCAAGTACAGAAAAGCAGACACCCCCACCCATACATAGGTTTCTTATCGGGGGAGCTGCAGTCCTCACCGACTCTCTGTGCTCCAG
Seq C2 exon
ACCTGAAGCCCCGCGGTGTGGTGGTGAACATGATCCCCGGGCTGCCGGCTCATATCCTGTTCATGTGTGTACGCTACGCAGACTCTCTAAATGACGCCGACATGCTCAAGTCCCTCATGAACAGCACCATTAATGGCATCAAGCAGGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131661=AAA_13=PD(6.5=41.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGACGTGCACCTGTCC
R:
CTTAACCACCTGCTTGATGCCA
Band lengths:
254-1525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development