RnoINT0097319 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82235154-82236810:+
Coord C1 exon
chr8:82235154-82235252
Coord A exon
chr8:82235253-82236655
Coord C2 exon
chr8:82236656-82236810
Length
1403 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGTA
5' ss Score
-1.33
3' ss Seq
CACGTTTCTTTCTGCTACAGACC
3' ss Score
9.95
Exon sequences
Seq C1 exon
CCAACAGTGTGCCCCTGCCCTCGGGATCCAGGGAGTACCTGGGAATGCTGGAGTACAAGAAAGAAGACGAGACCAAGCTCATTCAAAACCTCATTCTTG
Seq A exon
GTAGTAAAACTCGGATCGCTGGGCAATGCTTTCTCTTAGAGAACTTGAATATCAGACAGTTCCAAAGTCCTGGACAGAGGCCGACCTTTCTCTTTTCTCTTCTTTCACAGTTTCTTCCCTAGCTTGAAGCTTCCCTGCTTTAGCACTAACTTACCGAGCCATTCTTGGTTGAGGGAGAGGGGCTTTGCACTGCACACCACAGCAGCATACCGCTCGCCTCTGCTTACACTAGATACTGCTGTCAGCTCCAGGGTTTACAGACACTGCCAGTGTCCTCTGGGGAACCAAAATGGTCCTCGGCTGAGAGCTACTACCCCAAACTTCTCCCAAGTCTAATCGTAGGGTCAGGATGGAAGACGCAGCTCCTGGCCCTGGGCATGGTTGGCGAACCTGACATCCCAGCACTCCAGGGCAGAGGCAGGCAGATCTCTGAGATCGAGGACAGTCTGGTCTACAAAGCAAGTTCCAGGATGGCCAGGGCTACACAGAGACATCCATAGGAAATGAGGGGCCCTCTTTAAAGGCCCACCTTTAATGATCTAATTTCACTAGCTAGATACCAGCCTTCCCAGATGGCACCCCTAGTTGGGAAACAAACATTCAAAGCCTGTTTATAAGTGATATTCCAGTTTCAAACCCTAACACCGCCCAACCCGTGCTGACCTCTTCTCTACAGTTCTTATCTTGGCCACAGGGCAGTGCTGTTTTCCCTTCATGCTTCCCTACAAGGTTTCCTTCATCCCTGCTTTCTCTCTGATGTCTTTCTTTAAAAGACTAGCTTATGTATTTAATGTGTATGAGTGTCTACCTGCATGTATCTATGTATGTATATGCACCAGGTGCAGTCTTGGTGTTTACGGAAGCCAGAAAAGGGTTCCAGAGCCCTTGGAACTGGATATTCCAGATGGTTGTGAGCAACCAGGTGGGTGCTGGGAATTGACCTGGGTGCGCTTAACCTCTGGGTGCCTCTCCAGTCCCTCTCTGACATCTCCCTGTCTCCTCTGTGGTACTGCTGGTCACTAGTGTCTCTCTTCAAGACAGCTTCTGGTGACTCCTATCCATATCAGAGTTGACTAGGGCTTGGGTTCCTTTCTTATACTGGGGATCCAATGTCTTGAGCCTCCTCACTAGGGAAAATTACTTGTTTCTCCTATCTGGACTCTTAAATGTGGGGTCACTTTACAAAGGAGGTGAGAGGGGAGCCAGAGGCTCCCCTGTACTTTTGCCACATAAGACCCAGATTGAGTTTCTCTGAGAGAAGACACATCTGTGCTCCTAGCCTCTGCCCAAGCACAGAAAGGTCAGGAACCCTCCCCCTCCCACCCTCCCTCCCAGCAACCTCCACCAGCAGTTGCAGGAGGAGCGCTTACCAGCAGCTGAGAGCACGTTTCTTTCTGCTACAG
Seq C2 exon
ACCTGAAGCCCCGAGGCGTGGTGGTGAACATGATCCCTGGGCTGCCAGCTCACATCCTGTTCATGTGTGTGCGGTATGCAGACTCCCTGAACGATGCCAACATGCTCAAATCCCTCATGAACAGTGCTATTAACGGCATCAAGCATGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGTGTGCCCCTGC
R:
CTTAACCACATGCTTGATGCCG
Band lengths:
254-1657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]