RnoEX0057428 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82235154-82236810:+
Coord C1 exon
chr8:82235154-82235252
Coord A exon
chr8:82236092-82236174
Coord C2 exon
chr8:82236656-82236810
Length
83 bp
Sequences
Splice sites
3' ss Seq
TATGTATGTATATGCACCAGGTG
3' ss Score
5.27
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCAACAGTGTGCCCCTGCCCTCGGGATCCAGGGAGTACCTGGGAATGCTGGAGTACAAGAAAGAAGACGAGACCAAGCTCATTCAAAACCTCATTCTTG
Seq A exon
GTGCAGTCTTGGTGTTTACGGAAGCCAGAAAAGGGTTCCAGAGCCCTTGGAACTGGATATTCCAGATGGTTGTGAGCAACCAG
Seq C2 exon
ACCTGAAGCCCCGAGGCGTGGTGGTGAACATGATCCCTGGGCTGCCAGCTCACATCCTGTTCATGTGTGTGCGGTATGCAGACTCCCTGAACGATGCCAACATGCTCAAATCCCTCATGAACAGTGCTATTAACGGCATCAAGCATGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'48-51,'48-50,49-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000011768fB9263
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGGAATGCTGGAGTACA
R:
CATGTTGGCATCGTTCAGGGA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]