BtaINT0098343 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4824031-4824895:-
Coord C1 exon
chr2:4824740-4824895
Coord A exon
chr2:4824137-4824739
Coord C2 exon
chr2:4824031-4824136
Length
603 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CAGCACGCACTTGGCTCCAGGAC
3' ss Score
3.29
Exon sequences
Seq C1 exon
GTACAGCGAGGAGCGGGGCTGGCAGCTGCTATGGCTCTGCACCGGCCTCTTCCCACCCGGCAAGGCGCTGCTGCCGCACGCCCAGAAGTTCATAGACACGCGGAGAAGGAAGGTGCTGGCCCCTGACTGCAGCCGCCGCATCCAGAGGGTCCTGAG
Seq A exon
GTGAGCCTACCAACTCCTAGGTGCCCCTGGAACGTTGGTCTGGGAGTGCCGGGCGAGAGGGGGAGCCTCCAGTCTCCCAGGATCATGTTCCAGTGGGGACACCCGCCAGAGGAGCCAGACTCAGCTTCCTGTCTGAAGTGGTGTCAGTCTGGGGAGATAGGACCCGGTCCTAGCCACCAGGGAGGAAGACACAAGAGAGGCCCAGGAGGGCTGCAGGGAGGCTGGAGGGGTTGGCAGAGTTCCTGGCCACGAGTGGCCACCTGGGTCATGAAGAGGCCCGTACCCGATGCCCAGCTATGTGAAGATGGGAACACGACCCGCCCTGCCCACTGGTGGCCTGCCCAGCCTGGTCCTCTCCCCACGTGTCCTCAAACCTCGGGGCTCCTGGGAGATGAGGCCAGGCTGGCCTCTGCCGCCTCCTATGGGCCATGTGCCCAGCGCCTCCACAGGGCAGCTCCCCGCCCTGACCTGGGCACCACTGTGCACGTCTCTGGGGTTAGCTTCTGCTGTGTGCATGGCACATAGCTGAGCTCAGAGGCTGGTGCTGGGGCCCGGCCTGGGTGGGGGTGGTGGGTGGCCTATGCAGCACGCACTTGGCTCCAG
Seq C2 exon
GACAGGGCCCCGGAAGCAGCCGCCGCACCAGGTGGAGGTGGAGGCCGCTGAGCAGAACGTCTCCCGCATCTGCCACAAGGTCTACTTGCCCAACGACACAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=FE(48.6=100)
A:
NA
C2:
PF0078412=MyTH4=PD(15.9=47.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGCAGCTGCTATGG
R:
CTCACTTGTGTCGTTGGGCAA
Band lengths:
246-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]