BtaINT0100225 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018343 | NCR3
Description
natural cytotoxicity triggering receptor 3 precursor [Source:RefSeq peptide;Acc:NP_001035614]
Coordinates
chr23:27522934-27523556:+
Coord C1 exon
chr23:27522934-27523278
Coord A exon
chr23:27523279-27523448
Coord C2 exon
chr23:27523449-27523556
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AAACCCCCCGCAACATGCAGGAC
3' ss Score
4.34
Exon sequences
Seq C1 exon
GATCTTGTGTTCTCTGGGTGTCCCAGCCCCCTGAAATCCGTACCCAGGAGGGGTCCCCCGCCTTCCTGCCCTGTTCCTTCAATGCCAGCCAAGGGAGTTTGGCCATTGGTTCTGTCACATGGTACCGGGACAAAGTGGCCCCAGGGATGGAGGTGAGGAATGAGACCGCAGAGTTCCAGGGCCGCCTGGCCCCTCTCCCCTCTTCCCGCTTCCTCTGTGACCACCAGGCTGAGCTGCACATCTGGGACACCCGAGGCCGTGACACTGGAGTCTACGTGTGCAGGGTGGAGGTGCTGGGCCTGGGTGTCGGAACAGGGAATGGGACCCTGCTGGTGGTGGAGGAAG
Seq A exon
GTGAGGTGCCAGAAAGCCATGTCCCCTTGACTAGAGGCCCCACCCTCCCTGATAGTAGAAAGTCCCTCCCCAAGGCCCGCTGCCCTCCCCGAGCCTCTGCACACTTCTACCCAGGGCCTCCTCTCCTGAGCCCTTCTCCCCCTCCTCCCCAAACCCCCCGCAACATGCAG
Seq C2 exon
GACCTCCTCAGCTAGCGGCTGGCACAGTCCTCCTCCTTCGGGCTGGATTCTATGCCTTCAGCTTTCTCTCAGTGGCTATGGGCAGCAGCATGTATTACCAGGGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018343:ENSBTAT00000024407:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=94.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAATGAGACCGCAGAGT
R:
GGCATAGAATCCAGCCCGAAG
Band lengths:
248-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]