BtaEX0024045 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018343 | NCR3
Description
natural cytotoxicity triggering receptor 3 precursor [Source:RefSeq peptide;Acc:NP_001035614]
Coordinates
chr23:27522934-27523736:+
Coord C1 exon
chr23:27522934-27523278
Coord A exon
chr23:27523449-27523556
Coord C2 exon
chr23:27523690-27523736
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAACCCCCCGCAACATGCAGGAC
3' ss Score
4.34
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GATCTTGTGTTCTCTGGGTGTCCCAGCCCCCTGAAATCCGTACCCAGGAGGGGTCCCCCGCCTTCCTGCCCTGTTCCTTCAATGCCAGCCAAGGGAGTTTGGCCATTGGTTCTGTCACATGGTACCGGGACAAAGTGGCCCCAGGGATGGAGGTGAGGAATGAGACCGCAGAGTTCCAGGGCCGCCTGGCCCCTCTCCCCTCTTCCCGCTTCCTCTGTGACCACCAGGCTGAGCTGCACATCTGGGACACCCGAGGCCGTGACACTGGAGTCTACGTGTGCAGGGTGGAGGTGCTGGGCCTGGGTGTCGGAACAGGGAATGGGACCCTGCTGGTGGTGGAGGAAG
Seq A exon
GACCTCCTCAGCTAGCGGCTGGCACAGTCCTCCTCCTTCGGGCTGGATTCTATGCCTTCAGCTTTCTCTCAGTGGCTATGGGCAGCAGCATGTATTACCAGGGCAAAT
Seq C2 exon
ACCACTGTCACAAGGGAACACCCTGTCACTCCTTGGATGGCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018343-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=94.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGATGGAGGTGAGGAAT
R:
TCCAAGGAGTGACAGGGTGTT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development