HsaEX6046263 @ hg19
Exon Skipping
Gene
ENSG00000204475 | NCR3
Description
natural cytotoxicity triggering receptor 3 [Source:HGNC Symbol;Acc:19077]
Coordinates
chr6:31556672-31557903:-
Coord C1 exon
chr6:31557559-31557903
Coord A exon
chr6:31557303-31557410
Coord C2 exon
chr6:31556672-31557008
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTCTCCATTGCCCCATGCAGAAC
3' ss Score
6.68
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GATCCTGTGCTCTCTGGGTGTCCCAGCCCCCTGAGATTCGTACCCTGGAAGGATCCTCTGCCTTCCTGCCCTGCTCCTTCAATGCCAGCCAAGGGAGACTGGCCATTGGCTCCGTCACGTGGTTCCGAGATGAGGTGGTTCCAGGGAAGGAGGTGAGGAATGGAACCCCAGAGTTCAGGGGCCGCCTGGCCCCACTTGCTTCTTCCCGTTTCCTCCATGACCACCAGGCTGAGCTGCACATCCGGGACGTGCGAGGCCATGACGCCAGCATCTACGTGTGCAGAGTGGAGGTGCTGGGCCTTGGTGTCGGGACAGGGAATGGGACTCGGCTGGTGGTGGAGAAAG
Seq A exon
AACATCCTCAGCTAGGGGCTGGTACAGTCCTCCTCCTTCGGGCTGGATTCTATGCTGTCAGCTTTCTCTCTGTGGCCGTGGGCAGCACCGTCTATTACCAGGGCAAAT
Seq C2 exon
ATGCCAAATCTACTCTCTCCGGATTCCCCCAACTCTGAACTTTCCCTTCCACCAGGTCTGACCTGGAAAGGTCCAAGAAGGCAGCTGCCGGCTGTGGTCCCAGCGCCCCTCCCACCACCATGTGGGAGCTCAGCACATCTGCTTCCCCCAGTCCCAGGAGGCTGAGCCTGATTGTCCTGAGAAATGGGAAGGATCAGATATGACTCCTCCTTGGCAACTGCCCTTTCCTGCCAGGCCCACACATACCCTCTTCTGGCTGTTAGGGGAGCTTGGGTCCCTGAACACTGTCATTCACCCAATAAATTACTATTTGACCCCAGAGTGGGTGGAAGGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204475-'5-6,'5-4,6-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=94.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTTGCTTCTTCCCGTTT
R:
CAGCTGCCTTCTTGGACCTTT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)