HsaEX6046263 @ hg38
Exon Skipping
Gene
ENSG00000204475 | NCR3
Description
natural cytotoxicity triggering receptor 3 [Source:HGNC Symbol;Acc:HGNC:19077]
Coordinates
chr6:31588895-31589899:-
Coord C1 exon
chr6:31589782-31589899
Coord A exon
chr6:31589526-31589633
Coord C2 exon
chr6:31588895-31589176
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTCTCCATTGCCCCATGCAGAAC
3' ss Score
6.68
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCTGAGCTGCACATCCGGGACGTGCGAGGCCATGACGCCAGCATCTACGTGTGCAGAGTGGAGGTGCTGGGCCTTGGTGTCGGGACAGGGAATGGGACTCGGCTGGTGGTGGAGAAAG
Seq A exon
AACATCCTCAGCTAGGGGCTGGTACAGTCCTCCTCCTTCGGGCTGGATTCTATGCTGTCAGCTTTCTCTCTGTGGCCGTGGGCAGCACCGTCTATTACCAGGGCAAAT
Seq C2 exon
GTCTGACCTGGAAAGGTCCAAGAAGGCAGCTGCCGGCTGTGGTCCCAGCGCCCCTCCCACCACCATGTGGGAGCTCAGCACATCTGCTTCCCCCAGTCCCAGGAGGCTGAGCCTGATTGTCCTGAGAAATGGGAAGGATCAGATATGACTCCTCCTTGGCAACTGCCCTTTCCTGCCAGGCCCACACATACCCTCTTCTGGCTGTTAGGGGAGCTTGGGTCCCTGAACACTGTCATTCACCCAATAAATTACTATTTGACCCCAGAGTGGGTGGAAGGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204475-'5-7,'5-4,6-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=94.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCATCTACGTGTGCAGAG
R:
CAGTTGCCAAGGAGGAGTCAT
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains